View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15485_low_9 (Length: 444)
Name: NF15485_low_9
Description: NF15485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15485_low_9 |
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| [»] scaffold0426 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 3606677 - 3606422
Alignment:
| Q |
9 |
gagaagaagattagtgatttcagatnnnnnnnttgacacaactgcaccctctcaatgaagaaaatggaagaggaaacctaaagataggaactagagccga |
108 |
Q |
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| T |
3606677 |
gagaagaagattagtgatttcagataaaaaa-ttgacacaaatgcaccctctcaatgaagaaaatggaagaggaaacctaaagatagtaactagagccga |
3606579 |
T |
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| Q |
109 |
cttattggagagggagaacctaaaatcaagtgtctccttgtagcagttcaatttggttttcatatacgaaaattggacaattttttatctcttgtaataa |
208 |
Q |
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| T |
3606578 |
cttattggagagggagaacctaaaatcaagtgtctccttgtagc-gttcaatttggttttcatataggataattggacaattttttatctcttgtaataa |
3606480 |
T |
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| Q |
209 |
ccttcaggcaaatgactatgcatgtttcctatcctttatctgaacaataattagacac |
266 |
Q |
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| T |
3606479 |
ccttcgggcaaatgactatgcatgtttcctatcctttatctgaacaataattagacac |
3606422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 3606275 - 3606221
Alignment:
| Q |
375 |
agttcatcatcttgaagctgacaagtnnnnnnntactgcatctcatgtaaaaaat |
429 |
Q |
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| T |
3606275 |
agttcatcatcttgaagctgacatgtaaaaaattactgcatctcatgtaaaaaat |
3606221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0426 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0426
Description:
Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 6210 - 6143
Alignment:
| Q |
59 |
ctcaatgaagaaaatggaagaggaaacctaaagatag-gaactagagccgacttattggagagggaga |
125 |
Q |
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| T |
6210 |
ctcaatgaagaaactggaagagaaaacctaaagagagaaaattagggccggcttattggagagggaga |
6143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 9762724 - 9762752
Alignment:
| Q |
60 |
tcaatgaagaaaatggaagaggaaaccta |
88 |
Q |
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| T |
9762724 |
tcaatgaagaaaatggaagaggaaaccta |
9762752 |
T |
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