View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15486_high_3 (Length: 472)
Name: NF15486_high_3
Description: NF15486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15486_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Complemental strand, 34750185 - 34749749
Alignment:
| Q |
17 |
aatattcccctagactatgctctcttcagaggagatttcaacacaagagaccctgatagtggcttaatctacagaaacttgttagaccaaatgcttgact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34750185 |
aatattcccctagactatgctctcttcagaggagatttcaccacaagagaccctgatagtggcttaatctacagaaacttgttagaccaaatgcttgact |
34750086 |
T |
|
| Q |
117 |
ccctcctctttgccatgtcaaaactcggatactctaacatccagcttgtaatatccgaaacaggatggccaaactccggtgacatagaagaaacaggcgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34750085 |
ccctcctctttgccatgtcaaaactcggatactctaacatccagcttgtaatatccgaaacaggatggccaaactccggtgacatagaagaaacaggcgc |
34749986 |
T |
|
| Q |
217 |
aaacatctacaacgcagcgacatacaatcgcaatctcatccagcgaatgacagcaaaaccacccattggaaccccagcacgccccggtgtcccaataaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34749985 |
aaacatctacaacgcagcgacatacaatcgcaatctcatccagcgaatgacagcaaaaccacccattggaaccccagcacgccccggtgtcccaataaca |
34749886 |
T |
|
| Q |
317 |
accttcctcttctcacttttcgacgaaaaccaaaagccaggtcccggaacagaacgacactggggcttattacacacagatggaaccccaatttacgatc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34749885 |
accttcctcttctcacttttcgacgaaaaccaaaagccaggtcccggaacagaacgacactggggcttattacacacagatggaaccccaatttacgatc |
34749786 |
T |
|
| Q |
417 |
tagacttaacaggtnnnnnnnctaacacagattatgc |
453 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
34749785 |
tagacttaacaggtaaaaaaactaacacagattatgc |
34749749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 26593470 - 26593397
Alignment:
| Q |
77 |
ggcttaatctacagaaacttgttagaccaaatgcttgactccctcctctttgccatgtcaaaactcggatactc |
150 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
26593470 |
ggcttaatctacataaacttgttagacgaaatgcttgattccctcatctttgccatgtcaaaactcggatactc |
26593397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 411
Target Start/End: Complemental strand, 26593366 - 26593179
Alignment:
| Q |
224 |
tacaacgcagcgacatacaatcgcaatctcatccagcgaatgacagcaaaaccacccattggaaccccagcacgccccggtgtcccaataacaaccttcc |
323 |
Q |
| |
|
||||||||||| ||| |||||| |||||||||||| |||||||| |||||||||| || | ||| ||| |||| |||||||| ||| | |||||| |
|
|
| T |
26593366 |
tacaacgcagccacaaacaatcccaatctcatccaaagaatgacaacaaaaccaccaatcgaaacaccaatgtgccctggtgtccccatacccaccttca |
26593267 |
T |
|
| Q |
324 |
tcttctcacttttcgacgaaaaccaaaagccaggtcccggaacagaacgacactggggcttattac-acacagatggaaccccaattta |
411 |
Q |
| |
|
||||||||| |||| || |||||||||| ||||||||||| ||| | | ||||||||| ||||||| ||||||| |||||||| |||| |
|
|
| T |
26593266 |
tcttctcacctttcaacaaaaaccaaaaaccaggtcccgggacacagcaacactgggg-ttattactacacagacagaaccccagttta |
26593179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University