View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15486_high_5 (Length: 298)
Name: NF15486_high_5
Description: NF15486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15486_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 25792845 - 25793109
Alignment:
| Q |
17 |
cacagagctaaagggacaaagaggcattacactatgcacattcagaagtttttcatttgttaacttctccaaagacagagctagttccattgcttaaaca |
116 |
Q |
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| T |
25792845 |
cacagagctaaagggacaaagaggcattacactatgcacattcagaagtttttcatttgttaacttctccaaagacaaagctaattccattgcttaaaca |
25792944 |
T |
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| Q |
117 |
aaaggaatagaggaaaagcaaaaatcagcataataatagattagtgtaaaccataatgaaaagctccaaaactataatgtgtgagacagtgatcaaatca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25792945 |
aaaggaatagaggaaaagcaaaaatcagcataataatagattagtgtaaaccataatgaaaagctccaaaactataatgtgtgagacagtgatcaaatca |
25793044 |
T |
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| Q |
217 |
gcaaacaaactcaccatgtaatgcatcccctttttccacatgctcaaattctgagggcacattct |
281 |
Q |
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| T |
25793045 |
gtaaacaaactcaccatgtaatgcatcccctttttccacatgctcaaattctgagggcacattct |
25793109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 4112601 - 4112529
Alignment:
| Q |
34 |
aaagaggcattacactatgcacattcagaagtttttcatttgttaacttctccaaagacagagctagttccat |
106 |
Q |
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|||||||||||||||| || |||||||||||||| |||||| ||||||||||||||||||||| | |||||| |
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| T |
4112601 |
aaagaggcattacactgtgaacattcagaagtttctcatttactaacttctccaaagacagagccaattccat |
4112529 |
T |
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