View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15486_low_1 (Length: 560)
Name: NF15486_low_1
Description: NF15486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15486_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 14 - 542
Target Start/End: Original strand, 8776227 - 8776755
Alignment:
| Q |
14 |
gaataccaccaacacatccaatgtggaggatgagaataattcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8776227 |
gaataccaccaacacatccaatgtggaggatgagaataattcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttc |
8776326 |
T |
|
| Q |
114 |
gtttcttcaaaaacatatgatacatcggtaaatatcttcaacttcacagtgtatctctatattaatgatattttgcaaacggtccacaaacatgcacgct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8776327 |
gtttcttcaaaaacatatgatacatcggtaaatatcttcaacttcacagtgtgtctctatattaatgatattttgcaaacggtccacaaacatgcacgct |
8776426 |
T |
|
| Q |
214 |
gttccgnnnnnnnaaagaaacaaatccaaaaaattaatttttattttctcccataacacgtctttatgctatgtgtttttagtgttttggagataaaatg |
313 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8776427 |
gttccgtttttttaaagaaacaaatccaaaaaattaatttttattttctcccataacacgtctttatgctatgtgtttttagtgttttggagataaaatg |
8776526 |
T |
|
| Q |
314 |
aaccccgaagacaacaagcaaatagctgcttatgatctttctgaattccggagaagacttatggaatgtcttgacaggccttatgaccaaaaagagtatg |
413 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8776527 |
aaccccgaagacaacaaccaaatagctgcttatgatctttctgaattccggaaaagacttatggaatgtcttgacaggccttatgaccaaaaagagtatg |
8776626 |
T |
|
| Q |
414 |
atgagcttcttctcaaagcatctaagcatacgaaaaaagaacgccatctagaaacacggcagggggtggtcaaagcatattactctaaaggtctcagcaa |
513 |
Q |
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| T |
8776627 |
atgagcttcttctcaaagcatctaagcatacaaaaaaagaacgccatctagaaacccggcggggggtggtcaaagcatattactctaaaggtcttagcaa |
8776726 |
T |
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| Q |
514 |
atcatatcttgatatgtaccctggtaggt |
542 |
Q |
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| T |
8776727 |
atcatatcttgatatgtaccctggtaggt |
8776755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 265 - 412
Target Start/End: Original strand, 8782472 - 8782617
Alignment:
| Q |
265 |
cataacacgtctttatgctatgtgtttttagtgttttggagataaaatgaaccccgaagacaacaagcaaatagctgcttatgatctttctgaattccgg |
364 |
Q |
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|||||||||||| ||||| ||||| |||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||| |||| |||| || |
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| T |
8782472 |
cataacacgtct--atgctttgtgtgtttagtgttttggagaagaagtgaaccccaaagacaacatgcaaatagctgcttatgatgattctcaatttagg |
8782569 |
T |
|
| Q |
365 |
agaagacttatggaatgtcttgacaggccttatgaccaaaaagagtat |
412 |
Q |
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| T |
8782570 |
agaagacttttggaacatcttgacaggccttatgaccagaaagagtat |
8782617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 8787975 - 8788169
Alignment:
| Q |
14 |
gaataccaccaacacatccaatgtggaggatgagaataattcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttc |
113 |
Q |
| |
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||||||||| |||||| ||| |||||||||| | ||||| ||| ||| ||||| | | ||||||||| |||||| | |||||||| | ||||||||| |
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| T |
8787975 |
gaataccacaaacacacccacggtggaggatgggggtaattgctccgatccagatgttactattttggaaccttatcaagtttgtgaagatacccctttc |
8788074 |
T |
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| Q |
114 |
gtttcttcaaaaacatatgatacatcggtaaatatcttcaacttcacagtgtatctctatattaatgatattttgcaaacggtccacaaacatgcac |
210 |
Q |
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||| ||||||||| ||||||| |||| |||| | |||||||||| ||||||| || ||||| | ||||||||| || |||| |||||||||||| |
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| T |
8788075 |
gttccttcaaaaagatatgattcatctgtaagtgtcttcaactttgcagtgta--cctgtattagtcatattttgctaatggtctacaaacatgcac |
8788169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 8782220 - 8782411
Alignment:
| Q |
17 |
taccaccaacacatccaatgtggaggatgagaataattcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttcgtt |
116 |
Q |
| |
|
|||||| ||||||||||| |||||||||| | || | |||| ||| ||||| | | ||||||| | |||||||||||||||||| | |||||||||| |
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| T |
8782220 |
taccacaaacacatccaaggtggaggatgggggtattccctccgatccagatgtaactattttgaaatcttatccaatttgtgaagctaaccctttcgtt |
8782319 |
T |
|
| Q |
117 |
tcttcaaaaacatatgatacatcggtaaatatcttcaacttcacagtgtatctctatattaatgatattttgcaaacggtccacaaacatgcac |
210 |
Q |
| |
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||||||| | ||||||| |||| |||| | |||||||||| ||| || | ||| ||||| | ||||||| |||| |||| |||||||||||| |
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| T |
8782320 |
ccttcaaatatatatgattcatctgtaagtttcttcaactttacactg--tttctgtattagtaatatttttcaaatggtctacaaacatgcac |
8782411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 414
Target Start/End: Original strand, 8788295 - 8788378
Alignment:
| Q |
331 |
gcaaatagctgcttatgatctttctgaattccggagaagacttatggaatgtcttgacaggccttatgaccaaaaagagtatga |
414 |
Q |
| |
|
||||||||||||||||||| |||| |||| ||||||||||| ||||| |||||| ||||||||| ||||| |||||||||| |
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| T |
8788295 |
gcaaatagctgcttatgatgattctcaatttaggagaagacttttggaacatcttgaaaggccttataaccaacaagagtatga |
8788378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 14 - 542
Target Start/End: Complemental strand, 2541449 - 2540918
Alignment:
| Q |
14 |
gaataccaccaacacatccaatgtggaggatgagaataattcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttc |
113 |
Q |
| |
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|||| |||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||| |
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| T |
2541449 |
gaatgccactaacacatccaatgtggaggatgatagtaattcctctgattcagatctaattattttggattcttttccaatctgtggaaacacccctttc |
2541350 |
T |
|
| Q |
114 |
gtttcttcaaaaacatatgatacatcggtaaatatcttcaactt--cacagtgtatctctatattaatgatattttgcaaacggtccacaaacatgcacg |
211 |
Q |
| |
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||||||||||| ||||||||| |||| |||| | |||||||||| |||||| ||||||| ||||| | |||||||||||| | ||| ||||||||| | |
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| T |
2541349 |
gtttcttcaaagacatatgattcatcagtaagtgtcttcaactttgcacagtatatctctgtattagtcatattttgcaaatgatccttaaacatgcatg |
2541250 |
T |
|
| Q |
212 |
ctgttccgnnnnnnnaaa-gaaacaaatccaaaaaattaatttttattttctcccataacacgtctttatgctatgtgtttttagtgttttggagataaa |
310 |
Q |
| |
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|| ||| | ||| |||| || |||||| | |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
2541249 |
ctattcagtttttttaaaagaaaaaattccaaacagttaatttttaacttcttccataacacgtctttatgctatctgtttttagtgttttggagaagaa |
2541150 |
T |
|
| Q |
311 |
atgaaccccgaagacaacaagcaaatagctgcttatgatctttctgaattccggagaagacttatggaatgtcttgacaggccttatgaccaaaaagagt |
410 |
Q |
| |
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| T |
2541149 |
acgaaccccgaagacaacaagcaaatagctgcttatgatcattctcaatttaggagaacacttatggaatgtcttgaaaggccttatgacgaagaagagt |
2541050 |
T |
|
| Q |
411 |
atgatgagcttcttctcaaagcatctaagcatacgaaaaaagaacgccatctagaaacacggcagggggtggtcaaagcatattactctaaaggtctcag |
510 |
Q |
| |
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||||||| ||||| ||||||| |||||| || ||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||| | |||||||||| |
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| T |
2541049 |
atgatgaccttctgctcaaagtatctaaacaagcgaaaaaagaacgtcatctagaaacacggcagggggtggttaaatcatatcactgtgaaggtctcag |
2540950 |
T |
|
| Q |
511 |
caaatcatatcttgatatgtaccctggtaggt |
542 |
Q |
| |
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||||||||||||||||| | |||| ||||||| |
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|
| T |
2540949 |
caaatcatatcttgatacgcaccccggtaggt |
2540918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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