View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15486_low_4 (Length: 323)

Name: NF15486_low_4
Description: NF15486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15486_low_4
NF15486_low_4
[»] chr5 (1 HSPs)
chr5 (14-310)||(10841846-10842142)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 10842142 - 10841846
Alignment:
Q  14 caagaaattcataatccctttaaagaattaatggccttcaacaacaaatccaagaagactaattcaccttcacatttcaatttctgcatcacccttttct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10842142 caagaaattcataatccctttaaagaattaatggccttcaacaacaaatccaagaagactaattcaccttcacatttcaatttctgcatcacccttttct 10842043  T
Q  114 ccatttccttcttcattataccaacttttttcctcctcaacaattccacatcaaactccaaatgcaccaaccttaccaaaactttttcaggtgatcttcg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10842042 ccatttccttcttcattataccaacttttttcctcctcaacaattccacatcaaactccaaatgcaccaaccttaccaaaactttttcaggcgatcttcg 10841943  T
Q  214 ttcagccgagttttcatggaacagcctttcattttcacaacatggcaacccttcacctgtaattctcaaaattgcagtcttttctagaaaatggcct 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10841942 ttcagccgagttttcatggaacagcctttcattttcacaacatggcaacccttcacctgtaattctcaaaattgcagtcttttctagaaaatggcct 10841846  T

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