View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15486_low_6 (Length: 286)
Name: NF15486_low_6
Description: NF15486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15486_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 43255529 - 43255772
Alignment:
| Q |
1 |
ttcctgactcaggaaaggtagattctgttggagaagtagcagatgagtttaagagtgatgacaacgaaaaagaagtacaactcagggagctgcaaaatga |
100 |
Q |
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| T |
43255529 |
ttcctgactcaggaaaggtagattctgttggagaagtagcagatgagtttaagagtgatgacaacgaaaaagaagtacaactcagggagctgcaaaatga |
43255628 |
T |
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| Q |
101 |
tatgcatgttggaatgaatgctaaaccaaaattctcattgaaggtgaaggacgaggatattgaagaaaacggaattaaagagaagggaaacatcaagatg |
200 |
Q |
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| T |
43255629 |
tatgcatgttggaatgaatgctaaaccaaaattctcattgaaggtgaaggacgaggatattgaagaaaacggaattaaagagaagggaaacatcaagatg |
43255728 |
T |
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| Q |
201 |
cagaaaaatgtggtggagagtggcgtaaatgatgatgaggaaac |
244 |
Q |
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| T |
43255729 |
cagaaaaatgtggtggagagtggcgtaaatgatgacgaggaaac |
43255772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 43257671 - 43257752
Alignment:
| Q |
1 |
ttcctgactcaggaaaggtagattctgttggagaagtagcagatgagtttaagagtgatgacaacgaaaaagaagtacaact |
82 |
Q |
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| T |
43257671 |
ttcctgactcaggaaaggtagattctgttggagaagtaacaaatgagtttaaaagtaatgacaaagaaaaagaagtacaact |
43257752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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