View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15486_low_7 (Length: 244)
Name: NF15486_low_7
Description: NF15486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15486_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 12312852 - 12313071
Alignment:
| Q |
13 |
catagagttttcttcatctaaagtatttttatttgaaatattgccgtacattaaatatgaacatctatctcaatcaggatttgaacatcagctcctcaca |
112 |
Q |
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| T |
12312852 |
catagaattttcttcatctgaagtatttttatttgaaatattgtcgtacataaaatataaacatctatctcaatcaggatttgaacatcaactcctcaca |
12312951 |
T |
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| Q |
113 |
taatgagagtctaatccttccgttagactcagctgcttcgaagtcg-aacatgctattctagtacttaggattttgctgttggtttggatataaatattt |
211 |
Q |
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| T |
12312952 |
taatgagagtctaatccttccgttagactcaactgcttcgatgtcgaaacatgctagtctagtacttaggattttgctgttggtttggatataaatattt |
12313051 |
T |
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| Q |
212 |
ttatataataaccatgttat |
231 |
Q |
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|||||||||||||||||||| |
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| T |
12313052 |
ttatataataaccatgttat |
12313071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 12284696 - 12284918
Alignment:
| Q |
16 |
agagttttcttcatctaaagtatttttatttgaaatattgccgtacattaaatatgaacatctatctcaatcaggatttgaacatcagctcctcacataa |
115 |
Q |
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||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||| |||||||||||||||||| |||||||||||| ||||||| |||| |
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| T |
12284696 |
agagttttcttcatctaaagtatgtttatttaaaatattatcgtacataaaatattaacatctatctcaatcagaatttgaacatcaactcctcatataa |
12284795 |
T |
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| Q |
116 |
tgagagtctaatccttccgttagactcagctgcttcgaagtcgaacatgc----tattctagtacttaggattttgctgttggtttggatata---aata |
208 |
Q |
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||||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12284796 |
tgagagtctaatccttctgttagactcaactgcttcgatgtcgaacatgctatatattctagtacttaggattttgctgttggtttggatataaataata |
12284895 |
T |
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| Q |
209 |
tttttatataataaccatgttat |
231 |
Q |
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|||||||||||||| |||||||| |
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| T |
12284896 |
tttttatataataaacatgttat |
12284918 |
T |
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Back To:
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