View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15487_high_2 (Length: 468)
Name: NF15487_high_2
Description: NF15487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15487_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 34106371 - 34105940
Alignment:
| Q |
17 |
atgatatatgccattgcactagttgtcctgattttggttgtacaaataccacaactcatttcatagcatccttgatctaaaataaaaaaggtatgttatc |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34106371 |
atgatatatgccgttgcactagttgtcctgattttggttgtacaaataccacaactcatttcatagcatccgtgatctaaaataaaaaaggtatgttatc |
34106272 |
T |
|
| Q |
117 |
cccttgctctcaaaacggttcaaccaaacatactctttgacttcttatgtggttggatcctactttgagtctgagtatataatgtgttgctatgtgactc |
216 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34106271 |
cccttactctcaa--cggttcaaccaaacatactctttgacttcttatgtggttggatcctacttggagtctgagtatataatgtgttgctatgtgactc |
34106174 |
T |
|
| Q |
217 |
ttccacatgacttatctagtggttaggggtgtgaatatagtagaataaaattttgtaagacatgaattcggaataatcttctctaaatttgaactaccac |
316 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34106173 |
ttccacatgacttatcttgtggttaggggtgtgaatatagtagaataaaattttgtaagacatgaattcggaataatcttctctaaatttgaactaccac |
34106074 |
T |
|
| Q |
317 |
tttccaatcttttaccaacattttgataaaggttaaatatggtaggattacagaataccgacgagtatgcaatttttctagcattattcacccccacaac |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34106073 |
tttccaatcttttaccaacattttgataaaggttaaatatggtaggattacagaataccgacgagtatgcaatttttctagcattattcacccccacgac |
34105974 |
T |
|
| Q |
417 |
cgacatacatatcaggccacaagccaagcttcct |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34105973 |
cgacatacatatcaggccacaagccaagcttcct |
34105940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University