View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15487_low_4 (Length: 277)

Name: NF15487_low_4
Description: NF15487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15487_low_4
NF15487_low_4
[»] chr8 (16 HSPs)
chr8 (18-277)||(29447324-29447573)
chr8 (219-277)||(22652047-22652105)
chr8 (219-277)||(36450695-36450753)
chr8 (218-277)||(8343386-8343445)
chr8 (219-277)||(29447040-29447098)
chr8 (225-277)||(8343033-8343085)
chr8 (219-274)||(5813652-5813707)
chr8 (161-200)||(11803282-11803321)
chr8 (161-200)||(11927083-11927122)
chr8 (219-277)||(16641910-16641968)
chr8 (219-277)||(18407779-18407837)
chr8 (219-277)||(24858076-24858134)
chr8 (161-198)||(26902174-26902211)
chr8 (161-197)||(4786338-4786374)
chr8 (161-197)||(8847279-8847315)
chr8 (166-202)||(14634136-14634172)
[»] chr7 (11 HSPs)
chr7 (219-277)||(1433519-1433577)
chr7 (164-215)||(17307919-17307970)
chr7 (219-277)||(21864868-21864926)
chr7 (219-277)||(5409772-5409830)
chr7 (161-202)||(22602705-22602746)
chr7 (229-277)||(40131940-40131988)
chr7 (219-277)||(598268-598326)
chr7 (219-277)||(15680869-15680927)
chr7 (219-277)||(21880212-21880270)
chr7 (219-277)||(43027405-43027463)
chr7 (225-277)||(24105744-24105796)
[»] chr1 (23 HSPs)
chr1 (161-277)||(9828067-9828173)
chr1 (219-276)||(1486646-1486703)
chr1 (219-276)||(16297223-16297280)
chr1 (161-218)||(44482253-44482308)
chr1 (161-201)||(6427373-6427413)
chr1 (161-197)||(13436481-13436517)
chr1 (226-277)||(10233323-10233374)
chr1 (107-158)||(22881674-22881725)
chr1 (161-200)||(34371736-34371775)
chr1 (112-158)||(3490448-3490494)
chr1 (219-277)||(6427535-6427593)
chr1 (161-215)||(7918193-7918247)
chr1 (161-218)||(25361909-25361964)
chr1 (219-277)||(40258874-40258932)
chr1 (219-277)||(40917820-40917878)
chr1 (161-202)||(1486704-1486745)
chr1 (161-202)||(5944306-5944347)
chr1 (219-276)||(42359391-42359448)
chr1 (229-277)||(2218298-2218346)
chr1 (161-201)||(20157346-20157386)
chr1 (161-197)||(30749863-30749899)
chr1 (161-197)||(30771314-30771350)
chr1 (161-201)||(36906020-36906060)
[»] chr6 (21 HSPs)
chr6 (161-277)||(7248381-7248487)
chr6 (219-277)||(24645541-24645599)
chr6 (219-277)||(10294178-10294236)
chr6 (161-201)||(9025490-9025530)
chr6 (161-199)||(7151435-7151473)
chr6 (219-277)||(10339055-10339113)
chr6 (219-277)||(17841530-17841588)
chr6 (223-277)||(31959214-31959268)
chr6 (220-277)||(3209460-3209517)
chr6 (106-143)||(7977909-7977946)
chr6 (165-202)||(20576628-20576665)
chr6 (235-276)||(26178620-26178661)
chr6 (161-202)||(26562712-26562753)
chr6 (161-224)||(4388108-4388169)
chr6 (161-197)||(7027265-7027301)
chr6 (161-197)||(7265593-7265629)
chr6 (217-277)||(8776909-8776969)
chr6 (161-201)||(9027201-9027241)
chr6 (113-153)||(31673555-31673595)
chr6 (161-197)||(32511666-32511702)
chr6 (219-275)||(32978842-32978898)
[»] chr5 (9 HSPs)
chr5 (222-277)||(32766873-32766928)
chr5 (219-275)||(39268541-39268597)
chr5 (161-200)||(6471886-6471925)
chr5 (219-277)||(27932295-27932353)
chr5 (219-277)||(39698612-39698670)
chr5 (219-277)||(43564941-43564999)
chr5 (107-152)||(20683325-20683370)
chr5 (161-201)||(3966526-3966566)
chr5 (161-201)||(41091253-41091293)
[»] chr4 (14 HSPs)
chr4 (107-154)||(37203222-37203269)
chr4 (219-277)||(3947702-3947760)
chr4 (223-277)||(18513176-18513230)
chr4 (161-218)||(22234871-22234926)
chr4 (219-277)||(23292927-23292985)
chr4 (219-277)||(24613631-24613689)
chr4 (161-197)||(15029788-15029824)
chr4 (161-203)||(18576031-18576073)
chr4 (165-202)||(15659755-15659792)
chr4 (228-277)||(17425348-17425397)
chr4 (220-277)||(30103298-30103355)
chr4 (164-197)||(40783983-40784016)
chr4 (161-201)||(7970542-7970582)
chr4 (229-277)||(40965341-40965389)
[»] chr2 (12 HSPs)
chr2 (107-158)||(26769461-26769512)
chr2 (219-277)||(35449567-35449627)
chr2 (161-201)||(18622629-18622669)
chr2 (219-277)||(26769582-26769640)
chr2 (219-277)||(27084329-27084387)
chr2 (219-276)||(2438661-2438718)
chr2 (220-277)||(28677975-28678032)
chr2 (161-202)||(34784977-34785018)
chr2 (166-218)||(35056896-35056946)
chr2 (161-197)||(5367215-5367251)
chr2 (161-197)||(20242727-20242763)
chr2 (229-277)||(37419824-37419872)
[»] chr3 (17 HSPs)
chr3 (219-277)||(34185053-34185111)
chr3 (161-202)||(25948882-25948923)
chr3 (161-200)||(15314873-15314912)
chr3 (164-218)||(16192731-16192783)
chr3 (161-203)||(11313794-11313836)
chr3 (106-152)||(15796364-15796410)
chr3 (219-277)||(27505311-27505369)
chr3 (219-277)||(55401135-55401193)
chr3 (219-276)||(4987222-4987279)
chr3 (107-143)||(7171446-7171482)
chr3 (161-197)||(7928473-7928509)
chr3 (166-202)||(8039830-8039866)
chr3 (106-158)||(14747510-14747562)
chr3 (161-201)||(16789035-16789075)
chr3 (229-277)||(17005549-17005597)
chr3 (112-144)||(33313446-33313478)
chr3 (161-197)||(40993335-40993371)
[»] scaffold0019 (1 HSPs)
scaffold0019 (219-277)||(71796-71854)
[»] scaffold0003 (1 HSPs)
scaffold0003 (219-277)||(241665-241723)
[»] scaffold0171 (1 HSPs)
scaffold0171 (161-202)||(23443-23484)
[»] scaffold0123 (1 HSPs)
scaffold0123 (161-202)||(44520-44561)
[»] scaffold0022 (1 HSPs)
scaffold0022 (164-201)||(99919-99956)
[»] scaffold0020 (1 HSPs)
scaffold0020 (161-201)||(135308-135348)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 29447324 - 29447573
Alignment:
Q  18 atcaactctcacacatgtatacatttttacaatacaatcctatgaatcattggaaaaaattgtcattctaatcaaactataatcggaaactataaagcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29447324 atcaactctcacacatgtatacatttttacaatacaatcctatgaatcattggaaaaaattgtcattctaatcaaactataatcggaaactatgaagcac 29447423  T
Q  118 ggatatggacacagacaccggacacggcacagacacgccgaagatcacataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||  |||||            
T  29447424 ggatatggacacagacaccggacacggcacagacacgccgaagatcacataattaagtgtaattatatgtgttggtgtcgtgtcg--gtgtc-------- 29447513  T
Q  218 cgacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
     |||||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||||    
T  29447514 agacacgacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttcata 29447573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 22652047 - 22652105
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||||| ||||||||||    
T  22652047 gacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcata 22652105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 36450753 - 36450695
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||  |||||||||||||||||||| || ||| |||||||||||||||||||||    
T  36450753 gacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcata 36450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 8343386 - 8343445
Alignment:
Q  218 cgacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||| |||||||||||| ||||||| || ||| || ||||||||||||||||||    
T  8343386 cgacacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcata 8343445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 29447098 - 29447040
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||||||||| |||||||||||||| || |||  ||||||||| ||||||||||    
T  29447098 gacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 8343033 - 8343085
Alignment:
Q  225 acatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||||||| ||||||| || ||| || ||||||||||||||||||    
T  8343033 acatgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcata 8343085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 5813652 - 5813707
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttc 274  Q
    ||||||||| |||||||||||| ||||||| || || ||||||||||| |||||||    
T  5813652 gacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtgcttc 5813707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 11803282 - 11803321
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgt 200  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  11803282 atcacataattcagtgtaattatatgtgttggtgttgtgt 11803321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 11927122 - 11927083
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgt 200  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  11927122 atcacataattcagtgtaattatatgtgtcggtgtcgtgt 11927083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 16641968 - 16641910
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||||||  ||||| ||||||  || ||| |||||||||||||||||||||    
T  16641968 gacacgacatgtgtctaacaccgggacacacctaatccgaggagtgtctgtgcttcata 16641910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 18407779 - 18407837
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||  |||||||||| |||||||| || || ||||||||||| ||||||||||    
T  18407779 gacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcata 18407837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 24858076 - 24858134
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||||||| || || ||||||| || ||| ||||||||| |||||||||||    
T  24858076 gacacgacatgtgtcccacgccgggacacgcctaatcagaggagtgtttgtgcttcata 24858134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 26902211 - 26902174
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgt 198  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  26902211 atcacataattcagtgtaattatatgtgtcggtgtcgt 26902174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 4786374 - 4786338
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| |||||||||||||| |||||||    
T  4786374 atcacataattcagtgtaattatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 8847279 - 8847315
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| |||||||||||||| |||||||    
T  8847279 atcacataattcagtgtaattatatgtgtcggtgtcg 8847315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 14634172 - 14634136
Alignment:
Q  166 ataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  14634172 ataattcagtgtaattatatttgttggtgtcgtgtcg 14634136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 1433519 - 1433577
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||    
T  1433519 gacaagacatgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcata 1433577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 17307919 - 17307970
Alignment:
Q  164 acataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacac 215  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  17307919 acataattcagtgtaattatatgtgttggtgtcgtgtcggcatgtctgacac 17307970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 21864868 - 21864926
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||| |||||||||| ||  |||||||||||||||||||||    
T  21864868 gacacgacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcata 21864926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 5409830 - 5409772
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||| ||||||| || ||| |||||||||| ||||||||||    
T  5409830 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 5409772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 22602746 - 22602705
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  22602746 atcacataattcagtgtaattatatgtgtcggtgtcgtgtcg 22602705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 40131988 - 40131940
Alignment:
Q  229 gtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||  |||||||||| ||| |||||||||||||||||||||    
T  40131988 gtgtccgacacagggacacgtctaatccgaggagtgtctgtgcttcata 40131940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 598268 - 598326
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||| ||||||| || ||| ||| |||||| ||||||||||    
T  598268 gacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcata 598326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 15680869 - 15680927
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| ||||||||||||  ||||||||| ||  |||||||||| ||||||||||    
T  15680869 gacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcata 15680927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 21880212 - 21880270
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||  ||||||||||||||||||| || ||| ||| |||||| ||||||||||    
T  21880212 gacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcata 21880270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 43027463 - 43027405
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||| ||||||| || ||| || ||||||| ||||||||||    
T  43027463 gacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcata 43027405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 24105744 - 24105796
Alignment:
Q  225 acatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||||||| ||||||| || | | ||||||||| |||||||||||    
T  24105744 acatgtgtccgacaccgggacacgcctaacccgaggagtgtttgtgcttcata 24105796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 9828067 - 9828173
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgacgacacgacatgtgtccgacaccaggacacgtctcatcggagg 260  Q
    |||||||||||||| |||||| ||||||| |||||||||||  |||||| ||||||||        | |||||||||||| |||||||||| ||| ||||    
T  9828067 atcacataattcagtgtaattttatgtgtcggtgtcgtgtc--cgtgtcagacacgac--------acgtgtccgacaccgggacacgtctaatccgagg 9828156  T
Q  261 agtgtctgtgcttcata 277  Q
    |||||| ||||||||||    
T  9828157 agtgtccgtgcttcata 9828173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 1486703 - 1486646
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcat 276  Q
    ||||||||| |||||||||||| ||||||| || ||| ||||||||||||||||||||    
T  1486703 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 16297280 - 16297223
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcat 276  Q
    |||||||| ||||||||||||||||||||| || ||| |||||||||| |||||||||    
T  16297280 gacacgacgtgtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 44482253 - 44482308
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgac 218  Q
    |||||||||||||| |||||||||||||| ||||||||||||  ||||| ||||||||    
T  44482253 atcacataattcagtgtaattatatgtgtcggtgtcgtgtcg--gtgtcggacacgac 44482308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 6427373 - 6427413
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  6427373 atcacataattcaatgtaattatatgtgttggtgtcgtgtc 6427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 13436481 - 13436517
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| ||||||||||||||||||||||    
T  13436481 atcacataattcagtgtaattatatgtgttggtgtcg 13436517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 10233323 - 10233374
Alignment:
Q  226 catgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||||||||||||||||  || ||| |||||||||| ||||||||||    
T  10233323 catgtgtccgacaccaggacacacctaatcagaggagtgtccgtgcttcata 10233374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 22881725 - 22881674
Alignment:
Q  107 ctataaagcacggatatggacacagacaccggacacggcacagacacgccga 158  Q
    |||| |||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  22881725 ctatgaagcacggatatagacacggacaccggacacgacactgacacgccga 22881674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 34371736 - 34371775
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgt 200  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  34371736 atcacataattcagtgtaattatatgtgtcggtgtcgtgt 34371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 3490494 - 3490448
Alignment:
Q  112 aagcacggatatggacacagacaccggacacggcacagacacgccga 158  Q
    ||||||||||| ||| |||||||||||||||| ||| ||||||||||    
T  3490494 aagcacggatacggatacagacaccggacacgacactgacacgccga 3490448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 6427535 - 6427593
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||| ||||||| || ||| || ||||||| ||||||||||    
T  6427535 gacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcata 6427593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 7918247 - 7918193
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacac 215  Q
    |||||||||||||| ||||||||||||||  ||||||||||  ||| ||||||||    
T  7918247 atcacataattcagtgtaattatatgtgtcagtgtcgtgtcaacgtttctgacac 7918193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 25361909 - 25361964
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgac 218  Q
    |||||||||||||| ||||||||||||||  |||||||||||  ||||| ||||||||    
T  25361909 atcacataattcagtgtaattatatgtgtcagtgtcgtgtcg--gtgtcggacacgac 25361964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 40258932 - 40258874
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||  ||||||||||||||||||| || ||| ||||||||||  |||||||||    
T  40258932 gacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 40917820 - 40917878
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||| ||||||| || ||| ||||| |||| ||||||||||    
T  40917820 gacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcata 40917878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 1486745 - 1486704
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    |||||||||||||| ||||||||| |||| ||||||||||||    
T  1486745 atcacataattcagtgtaattataagtgtcggtgtcgtgtcg 1486704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 5944306 - 5944347
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    |||||||||||||| ||||||||| |||| ||||||||||||    
T  5944306 atcacataattcagtgtaattataagtgtcggtgtcgtgtcg 5944347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 42359448 - 42359391
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcat 276  Q
    |||| ||| ||||||||||||| ||||||| || ||| |||||||||| |||||||||    
T  42359448 gacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 2218298 - 2218346
Alignment:
Q  229 gtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||||| |||||||| || ||| |||||||||| ||||||||||    
T  2218298 gtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcata 2218346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 20157386 - 20157346
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||||||||||||| ||||| |||||||| |||||||||||    
T  20157386 atcacataattcagtgtaatcatatgtgtcggtgtcgtgtc 20157346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 30749863 - 30749899
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| |||||||||||||| |||||||    
T  30749863 atcacataattcagtgtaattatatgtgtcggtgtcg 30749899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 30771314 - 30771350
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| |||||||||||||| |||||||    
T  30771314 atcacataattcagtgtaattatatgtgtcggtgtcg 30771350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 36906020 - 36906060
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||||||||||||| ||||||||||||||||| || |||||    
T  36906020 atcacataattcagagtaattatatgtgttggcgttgtgtc 36906060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 7248381 - 7248487
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgacgacacgacatgtgtccgacaccaggacacgtctcatcggagg 260  Q
    |||||||||||||| ||||||||||||||||| |||||||||  |||| ||       ||||| |||||||||||||||| |||||||||  ||| ||||    
T  7248381 atcacataattcagggtaattatatgtgttggagtcgtgtcg--gtgt-tg-------gacacaacatgtgtccgacaccgggacacgtcaaatccgagg 7248470  T
Q  261 agtgtctgtgcttcata 277  Q
    |||||| ||||||||||    
T  7248471 agtgtccgtgcttcata 7248487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 24645541 - 24645599
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| ||||||||||||| ||||||||| ||| || ||||||||||||||||||    
T  24645541 gacacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcata 24645599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 10294178 - 10294236
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||||||||| || |||||||  || ||| |||||||||||||||||||||    
T  10294178 gacacgacatgtgtccgaaactaggacacagctaatctgaggagtgtctgtgcttcata 10294236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 9025530 - 9025490
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  9025530 atcacataattcagtgtaattatatgtgtcggtgtcgtgtc 9025490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 7151435 - 7151473
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtg 199  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  7151435 atcacataattaagtgtaattatatgtgttggtgtcgtg 7151473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 10339113 - 10339055
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||  ||||||||||  ||||||| || |||||||||||||| ||||||||||    
T  10339113 gacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcata 10339055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 17841588 - 17841530
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||||||||||||   |||||| || ||| |||||||||| ||||||||||    
T  17841588 gacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 31959214 - 31959268
Alignment:
Q  223 cgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||||||||| ||||||  || ||| |||||||||| ||||||||||    
T  31959214 cgacatgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 3209460 - 3209517
Alignment:
Q  220 acacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||| | |||||||||| ||||||| || ||| ||||||||| |||||||||||    
T  3209460 acacgacacgcgtccgacacccggacacgcctaatccgaggagtgtttgtgcttcata 3209517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 7977946 - 7977909
Alignment:
Q  106 actataaagcacggatatggacacagacaccggacacg 143  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  7977946 actataaagcacggatatggacacggacactggacacg 7977909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 20576665 - 20576628
Alignment:
Q  165 cataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  20576665 cataattcagtgtaattataagtgttggtgtcgtgtcg 20576628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 26178661 - 26178620
Alignment:
Q  235 gacaccaggacacgtctcatcggaggagtgtctgtgcttcat 276  Q
    |||||| ||||||| || ||||||||||||||||||||||||    
T  26178661 gacaccgggacacgcctaatcggaggagtgtctgtgcttcat 26178620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 26562712 - 26562753
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    |||||||||||||| |||||||||||||| | ||||||||||    
T  26562712 atcacataattcagtgtaattatatgtgtcgatgtcgtgtcg 26562753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 4388108 - 4388169
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgacgacacg 224  Q
    |||||||||| ||| ||||||||||||||  |||||||| ||  ||||||||||||| ||||||    
T  4388108 atcacataatccagggtaattatatgtgtcagtgtcgtggcg--gtgtctgacacgaggacacg 4388169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 7027265 - 7027301
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| |||||||||||||| |||||||    
T  7027265 atcacataattcagtgtaattatatgtgtcggtgtcg 7027301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 7265629 - 7265593
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| |||||||||||||| |||||||    
T  7265629 atcacataattcagtgtaattatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 8776969 - 8776909
Alignment:
Q  217 acgacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||||| ||||||||||||  |||||  || ||| |||||||||| ||||||||||    
T  8776969 acgacacgacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcata 8776909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 9027201 - 9027241
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||||||||||| | |||||||||||||| |||||||||||    
T  9027201 atcacataattccgtgtaattatatgtgtcggtgtcgtgtc 9027241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 31673595 - 31673555
Alignment:
Q  113 agcacggatatggacacagacaccggacacggcacagacac 153  Q
    |||||||||| |||||| ||||||||||||||||| |||||    
T  31673595 agcacggatacggacacggacaccggacacggcacggacac 31673555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 32511702 - 32511666
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  32511702 atcacataattcagtgtaattataagtgttggtgtcg 32511666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 32978898 - 32978842
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttca 275  Q
    |||||||||  ||||||||||| |||||||||| |||  ||||||||| ||||||||    
T  32978898 gacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 32766928 - 32766873
Alignment:
Q  222 acgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||| |||||||||||||||| |||||| ||| |||||||||| ||||||||||    
T  32766928 acgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcata 32766873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 39268597 - 39268541
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttca 275  Q
    |||||||||||||||||||||  ||||||| || ||| |||||||||| ||||||||    
T  39268597 gacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 6471925 - 6471886
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgt 200  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  6471925 atcacataattcagtgtaattatatgtgtgggtgtcgtgt 6471886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 27932295 - 27932353
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| ||||| |||||||||||||| || ||  ||||||||| |||||||||||    
T  27932295 gacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcata 27932353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 39698612 - 39698670
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||| |||||||||  |||||| || ||| |||||||||| ||||||||||    
T  39698612 gacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcata 39698670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 43564941 - 43564999
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||||||||||||| || ||||||| || ||| ||| |||||| ||||||||||    
T  43564941 gacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcata 43564999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 20683325 - 20683370
Alignment:
Q  107 ctataaagcacggatatggacacagacaccggacacggcacagaca 152  Q
    |||||||||||||||| |||||| ||||||||||||| ||| ||||    
T  20683325 ctataaagcacggatacggacacggacaccggacacgacacggaca 20683370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 3966526 - 3966566
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||||| ||||||| |||||||||||||| |||||||||||    
T  3966526 atcacacaattcagtgtaattatatgtgtcggtgtcgtgtc 3966566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 41091293 - 41091253
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||||||||||||| |||||||||||||| | |||||||||    
T  41091293 atcacataattcagtgtaattatatgtgtcgatgtcgtgtc 41091253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 37203222 - 37203269
Alignment:
Q  107 ctataaagcacggatatggacacagacaccggacacggcacagacacg 154  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  37203222 ctatgaagcacggatatggacacggacaccggacacgacacagacacg 37203269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 3947760 - 3947702
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||||||||||  || ||| |||||||||| ||||||||||    
T  3947760 gacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 18513230 - 18513176
Alignment:
Q  223 cgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||| ||||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  18513230 cgacgtgtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcata 18513176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 22234926 - 22234871
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgac 218  Q
    |||||||||||||| |||||| ||||||| ||||||||||||  ||||||||||||||    
T  22234926 atcacataattcagtgtaattctatgtgtcggtgtcgtgtcg--gtgtctgacacgac 22234871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 23292985 - 23292927
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||| ||||||| || ||| |||||||||| ||||||||||    
T  23292985 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 23292927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 24613689 - 24613631
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| ||||| ||||||||||||||||| |||  ||||||||| ||||||||||    
T  24613689 gacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcata 24613631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 15029788 - 15029824
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| ||||||||||||||||||||||    
T  15029788 atcacataattcagtgtaattatatgtgttggtgtcg 15029824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 18576073 - 18576031
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcgt 203  Q
    |||||||||||| | ||||||||||||||||||||| ||||||    
T  18576073 atcacataattcggtgtaattatatgtgttggtgtcatgtcgt 18576031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 15659792 - 15659755
Alignment:
Q  165 cataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    |||||||| | |||||||||||||||||||||||||||    
T  15659792 cataattcggtgtaattatatgtgttggtgtcgtgtcg 15659755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 17425397 - 17425348
Alignment:
Q  228 tgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||| ||||| |||||||| || ||| |||||||||||||||||||||    
T  17425397 tgtgtcagacacaaggacacgcctaatccgaggagtgtctgtgcttcata 17425348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 30103355 - 30103298
Alignment:
Q  220 acacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||| |||| |||||||| ||| ||| ||||||||||| |||||||||    
T  30103355 acacgacatatgtctgacatcaggacacatctaatccgaggagtgtctctgcttcata 30103298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 40783983 - 40784016
Alignment:
Q  164 acataattcagcgtaattatatgtgttggtgtcg 197  Q
    ||||||||||||||||| ||||||||||||||||    
T  40783983 acataattcagcgtaatcatatgtgttggtgtcg 40784016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 7970542 - 7970582
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||| ||||||||| |||||||||||| |||||||||||||    
T  7970542 atcatataattcagtgtaattatatgttttggtgtcgtgtc 7970582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 40965341 - 40965389
Alignment:
Q  229 gtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||||||| |||||| || ||| |||||||||| ||||||||||    
T  40965341 gtgtccgacaccaagacacgcctaatctgaggagtgtcggtgcttcata 40965389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 26769461 - 26769512
Alignment:
Q  107 ctataaagcacggatatggacacagacaccggacacggcacagacacgccga 158  Q
    |||| ||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  26769461 ctatgaagcacggatacggacacggacaccggacacgacacagacacgccga 26769512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 35449567 - 35449627
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctc--atcggaggagtgtctgtgcttcata 277  Q
    |||||||||  ||||||||||||| |||||||||  ||| |||||||||||||||||||||    
T  35449567 gacacgacacatgtccgacaccagaacacgtctctaatccgaggagtgtctgtgcttcata 35449627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 18622629 - 18622669
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  18622629 atcacataattcagtgtaattatacgtgttggtgtcgtgtc 18622669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 26769582 - 26769640
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||  ||||||| || ||| |||||||||| ||||||||||    
T  26769582 gacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcata 26769640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 27084329 - 27084387
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||| |||||  |||||| || ||||||||||||||| |||||||||    
T  27084329 gacacgacacgtgtccaacaccgagacacgcctaatcggaggagtgtctctgcttcata 27084387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 2438718 - 2438661
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcat 276  Q
    |||||||||  ||||||||||| ||||||| || ||| |||||||||| |||||||||    
T  2438718 gacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 28677975 - 28678032
Alignment:
Q  220 acacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||| |||||||||||  ||||||| || | ||||||||||||| |||||||||    
T  28677975 acacgacaagtgtccgacacagggacacggctgaccggaggagtgtctatgcttcata 28678032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 34785018 - 34784977
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    ||||||||||| || |||||||||||||| ||||||||||||    
T  34785018 atcacataatttagtgtaattatatgtgtcggtgtcgtgtcg 34784977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 35056896 - 35056946
Alignment:
Q  166 ataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgac 218  Q
    ||||||||| |||||||||||||| ||||||||||||  ||||| ||||||||    
T  35056896 ataattcagtgtaattatatgtgtcggtgtcgtgtcg--gtgtcggacacgac 35056946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 5367215 - 5367251
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| |||||||||||||| |||||||    
T  5367215 atcacataattcagtgtaattatatgtgtcggtgtcg 5367251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 20242763 - 20242727
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| |||||||||||||| |||||||    
T  20242763 atcacataattcagtgtaattatatgtgtcggtgtcg 20242727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 37419824 - 37419872
Alignment:
Q  229 gtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||||||||||| ||||||| || ||| |||||||||| ||||||||||    
T  37419824 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 37419872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 34185111 - 34185053
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    |||| ||||||||||||||||| ||||||| || ||| |||||||||| ||||||||||    
T  34185111 gacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 34185053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 25948923 - 25948882
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  25948923 atcacataattcagtgtaattataagtgttggtgtcgtgtcg 25948882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 15314912 - 15314873
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgt 200  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  15314912 atcacataatttagtgtaattatatgtgttggtgtcgtgt 15314873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 16192783 - 16192731
Alignment:
Q  164 acataattcagcgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgac 218  Q
    ||||||||||| |||||||||||||||| ||||||||||  ||||| ||||||||    
T  16192783 acataattcagtgtaattatatgtgttgatgtcgtgtcg--gtgtcagacacgac 16192731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 11313836 - 11313794
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcgt 203  Q
    ||||||||||| || ||||||||||||||| ||||||||||||    
T  11313836 atcacataatttagtgtaattatatgtgttagtgtcgtgtcgt 11313794  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 15796410 - 15796364
Alignment:
Q  106 actataaagcacggatatggacacagacaccggacacggcacagaca 152  Q
    ||||| |||||||||||||||||| ||||||||||||| ||| ||||    
T  15796410 actatgaagcacggatatggacacggacaccggacacgacacggaca 15796364  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 27505311 - 27505369
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||| ||||| | || ||| |||||||||| ||||||||||    
T  27505311 gacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcata 27505369  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 55401135 - 55401193
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| ||||||||||||  |||||| || ||| |||||||||| ||||||||||    
T  55401135 gacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcata 55401193  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 4987279 - 4987222
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcat 276  Q
    ||||||||| |||||||||||| ||||||| || ||| |||||||||| || ||||||    
T  4987279 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 7171446 - 7171482
Alignment:
Q  107 ctataaagcacggatatggacacagacaccggacacg 143  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  7171446 ctatgaagcacggatacggacacagacaccggacacg 7171482  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 7928473 - 7928509
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| |||||||||||||| |||||||    
T  7928473 atcacataattcagtgtaattatatgtgtcggtgtcg 7928509  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 8039866 - 8039830
Alignment:
Q  166 ataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  8039866 ataattcagtgtaattatatgtgtcggtgtcgtgtcg 8039830  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 14747510 - 14747562
Alignment:
Q  106 actataaagcacggatatggacacagacaccggacacggcacagacacgccga 158  Q
    ||||| ||||||||||| ||| || ||||||||||||| ||| ||||||||||    
T  14747510 actatgaagcacggatacggatacggacaccggacacgacactgacacgccga 14747562  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 16789035 - 16789075
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||| ||||||||| ||||||||| ||||||||||||||||    
T  16789035 atcatataattcagtgtaattataagtgttggtgtcgtgtc 16789075  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 17005597 - 17005549
Alignment:
Q  229 gtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||| ||||||||||||| ||| ||| ||||||||| |||||||||||    
T  17005597 gtgtctgacaccaggacacctctaatccgaggagtgtttgtgcttcata 17005549  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 33313446 - 33313478
Alignment:
Q  112 aagcacggatatggacacagacaccggacacgg 144  Q
    |||||||||||||||||| ||||||||||||||    
T  33313446 aagcacggatatggacacggacaccggacacgg 33313478  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 40993371 - 40993335
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcg 197  Q
    |||||||||||||| |||||||||||||| |||||||    
T  40993371 atcacataattcagtgtaattatatgtgtcggtgtcg 40993335  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 71796 - 71854
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||| ||| |||||||||||| ||||||| || ||| |||||||||| ||||||||||    
T  71796 gacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcata 71854  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 241665 - 241723
Alignment:
Q  219 gacacgacatgtgtccgacaccaggacacgtctcatcggaggagtgtctgtgcttcata 277  Q
    ||||||||| |||||||||||| ||||||| || ||| ||| |||||| ||||||||||    
T  241665 gacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcata 241723  T

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Target: scaffold0171 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 23443 - 23484
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    |||||||||||||| ||||||||| |||| ||||||||||||    
T  23443 atcacataattcagtgtaattataagtgtcggtgtcgtgtcg 23484  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 44561 - 44520
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtcg 202  Q
    |||||||||||||| |||||||||||||| ||| ||||||||    
T  44561 atcacataattcagtgtaattatatgtgtcggtatcgtgtcg 44520  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 99919 - 99956
Alignment:
Q  164 acataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  99919 acataattcaatgtaattatatgtgttggtgtcgtgtc 99956  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 135348 - 135308
Alignment:
Q  161 atcacataattcagcgtaattatatgtgttggtgtcgtgtc 201  Q
    |||||||||||| | |||||||||||||| |||||||||||    
T  135348 atcacataattctgtgtaattatatgtgtcggtgtcgtgtc 135308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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