View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15488_high_2 (Length: 457)
Name: NF15488_high_2
Description: NF15488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15488_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 42673316 - 42673755
Alignment:
| Q |
1 |
gaagagtaggtcagcgtcagttggtagagaagctggtttcgcgaaacagaaggtaattaatgtgcatgaagaagatgaagaagaaagaatgacaacatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42673316 |
gaagagtaggtcagcgtcagttggtagagaagctggtttcgcgaaacagaaggtaattaatgtgcatgaagaagatgaagaagaaagaatgacaacatca |
42673415 |
T |
|
| Q |
101 |
aatgaaattgaacgcaacaaatttatatttaaaagatacaatattgaagaaattgaagttgcaacaaattactttgatatggatggcaaaattggtgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42673416 |
aatgaaattgaacgcaacaaatttatatttaaaagatacaatattgaagaaattgaagttgcaacaaattactttgatatggatggcaaaattggtgaag |
42673515 |
T |
|
| Q |
201 |
gtggatatggacctgttttcaaaggagtacttgacaacactgatgttgcagttaaagccttaagaccagatatgactcaaggggagaaacaatttaatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42673516 |
gtggatatggacctgttttcaaaggagtacttgacaacactgatgttgcagttaaagccttaagaccagatatgactcaaggggagaaacaatttaatca |
42673615 |
T |
|
| Q |
301 |
agaggtaaccgcannnnnnnnnnnnggaagatacaagtagcatgaatattatagtttcttcaaagtttcataaccttaatgactccaatgcaggtccttg |
400 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42673616 |
agaggtaacaacattttttgtttttggaagatacaagtagcatgaatattatagtttcttcaaagtttcataaccttaatgactccaatgcaggtccttg |
42673715 |
T |
|
| Q |
401 |
ttttaggctccataagacatcccaacattgtagtactttt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42673716 |
ttttaggctccataagacatcccaacattgtagtactttt |
42673755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 6516070 - 6516163
Alignment:
| Q |
141 |
atattgaagaaattgaagttgcaacaaattactttgatatggatggcaaaattggtgaaggtggatatggacctgttttcaaaggagtacttga |
234 |
Q |
| |
|
||||| |||||||| |||||||||| ||| |||||| | | | ||||||||||||||| || |||||||||||||| ||||| || ||||| |
|
|
| T |
6516070 |
atattaaagaaattcaagttgcaactaatggctttgacaatgctctcaaaattggtgaaggggggtatggacctgtttttaaaggtgtgcttga |
6516163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University