View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15488_high_4 (Length: 255)
Name: NF15488_high_4
Description: NF15488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15488_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 43143336 - 43143448
Alignment:
| Q |
128 |
catactgttctggttcttgttctctggttataaatttcnnnnnnnctcctttcttggtttcttcatctcgaccacctaatacaacaaatatataccaaca |
227 |
Q |
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| T |
43143336 |
catactgttctggttcttgttctctggttataaatttctttttttctcctttcttggtttcttcatctcgaccacctaatacaacaaatatataccaaca |
43143435 |
T |
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| Q |
228 |
caaccatattaat |
240 |
Q |
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||||||||||||| |
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| T |
43143436 |
caaccatattaat |
43143448 |
T |
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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43143192 - 43143256
Alignment:
| Q |
1 |
aggaagtggcgtcatcattggattctctccttctctctcacctgctgactgccaatatctgcatc |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43143192 |
aggaagtggcgtcatcattggattctctccttctctctcacctgctgactgccaatatctgcatc |
43143256 |
T |
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