View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15488_high_5 (Length: 220)
Name: NF15488_high_5
Description: NF15488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15488_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 10272001 - 10271813
Alignment:
| Q |
16 |
aagaacacagaagttgatttgcaactatcagtggaaacagcatccaagttgttagctgaggagaaaattgaagtgattgactacactagctacattgatt |
115 |
Q |
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| T |
10272001 |
aagaacacagaagttgatttgcaactatcagtggaaacagcatccaagttgttagctgaggagaaaattgaagtgattgactacactagctacattgatt |
10271902 |
T |
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| Q |
116 |
tatcgaaagaaccaggacattatgttatcttctgggaaatcagtggcgaagcaagtgatgatgtgcttgatgaatgttgtacatgcttg |
204 |
Q |
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| T |
10271901 |
tatcgaaagaaccaggacattatgttatcttctgggaaatcagtggcgaagcaagtgatgatgtgcttgatgaatgttgtacatgcttg |
10271813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 10241844 - 10241674
Alignment:
| Q |
30 |
tgatttgcaactatcagtggaaacagcatccaagttgttagctgaggagaaaattgaagtgattgactacactagctacattgatttatcgaaagaacca |
129 |
Q |
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| T |
10241844 |
tgatttacaattatcagtggaaacagcttccatgttgttagctgaagagaaaatggaagtgattgactatactagctacattgatttatccaaagaacca |
10241745 |
T |
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| Q |
130 |
ggacattatgttatcttctgggaaatcagtggcgaagcaagtgatgatgtgcttgatgaatgttgtacatg |
200 |
Q |
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| T |
10241744 |
ggacattatgttattttttgggaaatcagtggtgaagcaagtgatgaagtgcttggtgaatgttgtacatg |
10241674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 10283489 - 10283311
Alignment:
| Q |
16 |
aagaacacagaagttgatttgcaactatcagtggaaacagcatccaagttgttagctgaggagaaaattgaagtgattgactacactagctacattgatt |
115 |
Q |
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| T |
10283489 |
aagaactcagaagctgatctgcaactatcggtggaaacagcatccgagttgttagctaaggagaaaatagaagtgattgactacactagctacattgatt |
10283390 |
T |
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| Q |
116 |
tatcgaaagaaccaggacattatgttatcttctgggaaatcagtggcgaagcaagtgatgatgtgcttgatgaatgttg |
194 |
Q |
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| T |
10283389 |
tatctaaacaaccaggacactatgttatcttttgggaaatcaatggcgaagcaagcgatgaagtgcttggtgagtgttg |
10283311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 10263829 - 10263645
Alignment:
| Q |
16 |
aagaacacagaagttgatttgcaactatcagtggaaacagcatccaagttgttagctgaggagaaaattgaagtgattgactacactagctacattgatt |
115 |
Q |
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||||||||||| |||| | ||| |||| || |||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10263829 |
aagaacacagagaatgatctacaaatatcggtcgaaacatcgtccaagatgttagctgaggagaaaatggaagtgattgactacactagctacattgatt |
10263730 |
T |
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| Q |
116 |
tatcgaaagaaccaggacattatgttatcttctgggaaatcagtggcgaagcaagtgatgatgtgcttgatgaatgttgtacatg |
200 |
Q |
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| T |
10263729 |
tatccaatgacccaggacactatgttatcttctgggaaatcagcggtgaagcaagtgatgctgtgctttatgaatgttgtacatg |
10263645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 48369681 - 48369765
Alignment:
| Q |
110 |
ttgatttatcgaaagaaccaggacattatgttatcttctgggaaatcagtggcgaagcaagtgatgatgtgcttgatgaatgttg |
194 |
Q |
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| T |
48369681 |
ttgatttatccaaagagccagggaactatgtaatcttctgggaaatcaacggggaagcaagtgaagaagtgcttcatgaatgttg |
48369765 |
T |
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