View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15488_low_1 (Length: 479)
Name: NF15488_low_1
Description: NF15488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15488_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 5162562 - 5162099
Alignment:
| Q |
1 |
agctatttgaggaactcttggatatgatatgacgacaaagatggtaacagaagttgtatgcaacttaatcggaaatcgctgctattggattcaacaacat |
100 |
Q |
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| T |
5162562 |
agctatttgaggaactcttggatatgatatgacgacaaagatggtaacagaagttgtatgcaacttaatcggaaatcgctgctattggattcaacaacat |
5162463 |
T |
|
| Q |
101 |
ggtttcaatacaaaaggatgaaagaaaccacaaataataagagatttgataataatacgtgttacaataaactaacatcattctcatacttagtcgaggt |
200 |
Q |
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| T |
5162462 |
ggtttcaatacaaaaggatgaaagaaaccacaaataataagagatttgataataatacgtgttacaataaactaacatcattctcatacttagtcgaggt |
5162363 |
T |
|
| Q |
201 |
ccagtactaagataattgataacataattaactagtacaagtgtacaagtacaaccacatttcaatgagactattaacatgatattaagttcataatgaa |
300 |
Q |
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| T |
5162362 |
ccagtactaagataattgataacataattaactagtacaagtgtacaagtacaaccacatttcaatgagactattaacatgatattaagttcataatgaa |
5162263 |
T |
|
| Q |
301 |
gtcttcaatatttctgagtctgcataattttgatattctatgacatatgtatacagttagctaattgattatgcattaatatgaagatnnnnnnnncaac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5162262 |
gtcttcaatatttctgagtctgcataattttgatattctatgacaaatgtatacagttagctaattgattatgcattaatatgaagataaaaaaaacaac |
5162163 |
T |
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| Q |
401 |
aacaattcttcttctgattgctattagagtctgacaacagagtaattagataagcattaatatg |
464 |
Q |
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| T |
5162162 |
aacaattcttcttctgattgctattagagtctgacaacagagtaattagataagcattaatatg |
5162099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 5216038 - 5215974
Alignment:
| Q |
280 |
tgatattaagttcataatgaagtcttcaatatttctgagtctgcataattttgatattctatgaca |
345 |
Q |
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| T |
5216038 |
tgatattaagttcat-atgaagcctccaatattgctaagtctgcatacttttgatcttctatgaca |
5215974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 464
Target Start/End: Original strand, 4854917 - 4854986
Alignment:
| Q |
398 |
aacaacaattcttcttctgattgctattagagtctgacaac--agagt-aattagataagcattaatatg |
464 |
Q |
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|||||||||||||||| |||||||||||| | |||||||| ||||| ||||| ||||||||||||||| |
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| T |
4854917 |
aacaacaattcttcttttgattgctattacaaactgacaacatagagtaaattatataagcattaatatg |
4854986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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