View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15488_low_5 (Length: 244)

Name: NF15488_low_5
Description: NF15488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15488_low_5
NF15488_low_5
[»] chr4 (14 HSPs)
chr4 (1-102)||(32317468-32317569)
chr4 (113-149)||(32317563-32317599)
chr4 (194-226)||(38009162-38009194)
chr4 (193-226)||(2777176-2777209)
chr4 (193-226)||(5271656-5271689)
chr4 (193-226)||(15642417-15642450)
chr4 (193-226)||(17740944-17740977)
chr4 (193-226)||(19830755-19830788)
chr4 (197-226)||(28134764-28134793)
chr4 (193-226)||(47556780-47556813)
chr4 (193-226)||(53343308-53343341)
chr4 (193-226)||(54331124-54331157)
chr4 (194-226)||(17700075-17700107)
chr4 (193-225)||(36514698-36514730)
[»] chr2 (16 HSPs)
chr2 (168-226)||(35285613-35285671)
chr2 (193-226)||(45399706-45399739)
chr2 (194-226)||(19167204-19167236)
chr2 (193-226)||(1514326-1514359)
chr2 (193-226)||(4812445-4812478)
chr2 (193-226)||(11448649-11448682)
chr2 (193-226)||(18092075-18092108)
chr2 (193-226)||(18137855-18137888)
chr2 (193-226)||(26822511-26822544)
chr2 (193-226)||(27364196-27364229)
chr2 (193-226)||(33908145-33908178)
chr2 (193-226)||(42886294-42886327)
chr2 (194-226)||(5253248-5253280)
chr2 (194-226)||(11707528-11707560)
chr2 (194-226)||(16723718-16723750)
chr2 (194-226)||(26828413-26828445)
[»] chr8 (13 HSPs)
chr8 (193-226)||(7015773-7015806)
chr8 (193-226)||(12760851-12760884)
chr8 (193-226)||(19248751-19248784)
chr8 (193-226)||(19321935-19321968)
chr8 (193-226)||(27273832-27273865)
chr8 (193-226)||(33423613-33423646)
chr8 (193-226)||(38994308-38994341)
chr8 (193-226)||(41157196-41157229)
chr8 (193-226)||(41978128-41978161)
chr8 (193-226)||(44600324-44600357)
chr8 (194-226)||(19394894-19394926)
chr8 (194-226)||(36597367-36597399)
chr8 (138-170)||(42060651-42060683)
[»] chr7 (9 HSPs)
chr7 (193-226)||(42688437-42688470)
chr7 (193-226)||(42918751-42918784)
chr7 (194-226)||(11500735-11500767)
chr7 (196-226)||(19522019-19522049)
chr7 (193-226)||(8925280-8925313)
chr7 (193-226)||(23762401-23762434)
chr7 (193-226)||(27734394-27734427)
chr7 (193-226)||(33638017-33638050)
chr7 (197-226)||(42826704-42826733)
[»] chr6 (5 HSPs)
chr6 (193-226)||(4425340-4425373)
chr6 (193-226)||(1072637-1072670)
chr6 (193-226)||(14832350-14832383)
chr6 (193-226)||(34321951-34321984)
chr6 (193-225)||(35041951-35041983)
[»] chr5 (10 HSPs)
chr5 (168-226)||(33931068-33931126)
chr5 (193-225)||(34373724-34373756)
chr5 (193-226)||(4883025-4883058)
chr5 (193-226)||(10511719-10511752)
chr5 (193-226)||(17997413-17997446)
chr5 (193-226)||(20995233-20995266)
chr5 (193-226)||(33706111-33706144)
chr5 (193-226)||(41781762-41781795)
chr5 (194-226)||(19395608-19395640)
chr5 (193-225)||(19448841-19448873)
[»] chr1 (6 HSPs)
chr1 (168-226)||(12245201-12245259)
chr1 (194-226)||(44407247-44407279)
chr1 (197-226)||(17672343-17672372)
chr1 (193-226)||(24294823-24294856)
chr1 (193-226)||(52310725-52310758)
chr1 (193-225)||(39760073-39760105)
[»] scaffold0171 (1 HSPs)
scaffold0171 (194-226)||(29694-29726)
[»] chr3 (9 HSPs)
chr3 (194-226)||(54513669-54513701)
chr3 (147-226)||(21698883-21698963)
chr3 (193-226)||(31368382-31368415)
chr3 (168-226)||(32756390-32756448)
chr3 (193-226)||(39093208-39093241)
chr3 (193-226)||(40824009-40824042)
chr3 (193-226)||(50770613-50770646)
chr3 (193-226)||(52842465-52842498)
chr3 (194-226)||(48988937-48988969)
[»] scaffold0169 (1 HSPs)
scaffold0169 (193-226)||(17033-17066)
[»] scaffold0045 (1 HSPs)
scaffold0045 (193-226)||(12268-12301)
[»] scaffold0016 (1 HSPs)
scaffold0016 (194-226)||(101594-101626)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 32317468 - 32317569
Alignment:
Q  1 ttttgaatcgattctcctaattattttggacatatgttttacattaaaagaagcattagttgcgttaatttctcataaggttatgaatgcgaagcagtgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  32317468 ttttgaatcgattctcctaattattttggacatatgttttacattaaaagaagcattagttgcgttaatttctcatgaggttatgaatgcaaagcagtgc 32317567  T
Q  101 ac 102  Q
    ||    
T  32317568 ac 32317569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 32317563 - 32317599
Alignment:
Q  113 agtgcacacttagattacattattatttatatgcaaa 149  Q
    |||||||||||||||||||||||||||||||||||||    
T  32317563 agtgcacacttagattacattattatttatatgcaaa 32317599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 38009194 - 38009162
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||||||||||||||    
T  38009194 tcttcgaaagaagagatgttaaaacgacggaac 38009162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 2777209 - 2777176
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  2777209 ttctttgaaagaagagatgttaaaacgacggaac 2777176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 5271656 - 5271689
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  5271656 ttctttgaaagaagagatgttaaaacgacggaac 5271689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 15642417 - 15642450
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  15642417 ttctttgaaagaagagatgttaaaacgacggaac 15642450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 17740977 - 17740944
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  17740977 ttcttcgaaagaaaagatgttaaaacgacggaac 17740944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 19830755 - 19830788
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||| |||||||||||||||||||||    
T  19830755 ttcttcgaaagatgagatgttaaaacgacggaac 19830788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 28134764 - 28134793
Alignment:
Q  197 tcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||||||||||||||    
T  28134764 tcgaaagaagagatgttaaaacgacggaac 28134793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 47556780 - 47556813
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  47556780 ttcttcgaaagaaaagatgttaaaacgacggaac 47556813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 53343341 - 53343308
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  53343341 ttctttgaaagaagagatgttaaaacgacggaac 53343308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 54331124 - 54331157
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  54331124 ttctttgaaagaagagatgttaaaacgacggaac 54331157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 17700107 - 17700075
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||| ||||||||||||||||||||    
T  17700107 tcttcgaaagaatagatgttaaaacgacggaac 17700075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 36514698 - 36514730
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaa 225  Q
    ||||| |||||||||||||||||||||||||||    
T  36514698 ttctttgaaagaagagatgttaaaacgacggaa 36514730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 35285613 - 35285671
Alignment:
Q  168 ttcaataatatattcgatnnnnnnnttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  35285613 ttcaataatatattcgataaaaaaattcttcgaaagaagagatgttaaaacgacggaac 35285671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 45399739 - 45399706
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||||||||||||||||||    
T  45399739 ttcttcgaaagaagagatgttaaaacgacggaac 45399706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 19167204 - 19167236
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||||||||||||||    
T  19167204 tcttcgaaagaagagatgttaaaacgacggaac 19167236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 1514326 - 1514359
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  1514326 ttcttcgaaagaaaagatgttaaaacgacggaac 1514359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 4812478 - 4812445
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||| |||||||||||||||    
T  4812478 ttcttcgaaagaagagatattaaaacgacggaac 4812445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 11448682 - 11448649
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||| |||||||||||||||||||||||    
T  11448682 ttcttcgaaaaaagagatgttaaaacgacggaac 11448649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 18092075 - 18092108
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  18092075 ttcttcgaaagaaaagatgttaaaacgacggaac 18092108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 18137888 - 18137855
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  18137888 ttctttgaaagaagagatgttaaaacgacggaac 18137855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 26822544 - 26822511
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  26822544 ttctttgaaagaagagatgttaaaacgacggaac 26822511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 27364196 - 27364229
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  27364196 ttctttgaaagaagagatgttaaaacgacggaac 27364229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 33908178 - 33908145
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||| |||||||||||||||    
T  33908178 ttcttcgaaagaagagatattaaaacgacggaac 33908145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 42886327 - 42886294
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  42886327 ttctttgaaagaagagatgttaaaacgacggaac 42886294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 5253280 - 5253248
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||| ||||||||||||||||||||||||||||    
T  5253280 tctttgaaagaagagatgttaaaacgacggaac 5253248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 11707560 - 11707528
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||| |||||||||||||||    
T  11707560 tcttcgaaagaagagatattaaaacgacggaac 11707528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 16723718 - 16723750
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||| ||||||||||||||||||||||||||||    
T  16723718 tctttgaaagaagagatgttaaaacgacggaac 16723750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 26828445 - 26828413
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||| |||||||||||||||    
T  26828445 tcttcgaaagaagagatattaaaacgacggaac 26828413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 7015806 - 7015773
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||||||||||||||||||    
T  7015806 ttcttcgaaagaagagatgttaaaacgacggaac 7015773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 12760884 - 12760851
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  12760884 ttcttcgaaagaaaagatgttaaaacgacggaac 12760851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 19248784 - 19248751
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||| ||||||||||||||||||||||||    
T  19248784 ttcttcgaaggaagagatgttaaaacgacggaac 19248751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 19321968 - 19321935
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||| ||||||||||||||||||||||||    
T  19321968 ttcttcgaaggaagagatgttaaaacgacggaac 19321935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 27273865 - 27273832
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  27273865 ttctttgaaagaagagatgttaaaacgacggaac 27273832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 33423613 - 33423646
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  33423613 ttctttgaaagaagagatgttaaaacgacggaac 33423646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 38994341 - 38994308
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||| |||||||||||||||    
T  38994341 ttcttcgaaagaagagatattaaaacgacggaac 38994308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 41157229 - 41157196
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  41157229 ttcttcgaaagaaaagatgttaaaacgacggaac 41157196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 41978161 - 41978128
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  41978161 ttcttcgaaagaaaagatgttaaaacgacggaac 41978128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 44600357 - 44600324
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||| |||||||||||||||    
T  44600357 ttcttcgaaagaagagatattaaaacgacggaac 44600324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 19394894 - 19394926
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| |||||||||||||||||||||||||||    
T  19394894 tcttctaaagaagagatgttaaaacgacggaac 19394926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 36597367 - 36597399
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||| ||||||||||||||||||||||||||||    
T  36597367 tctttgaaagaagagatgttaaaacgacggaac 36597399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 42060651 - 42060683
Alignment:
Q  138 tttatatgcaaactagttacaaacccgtgcttc 170  Q
    ||||||| |||||||||||||||||||||||||    
T  42060651 tttatatccaaactagttacaaacccgtgcttc 42060683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 42688470 - 42688437
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||||||||||||||||||    
T  42688470 ttcttcgaaagaagagatgttaaaacgacggaac 42688437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 42918784 - 42918751
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||||||||||||||||||    
T  42918784 ttcttcgaaagaagagatgttaaaacgacggaac 42918751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 11500767 - 11500735
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||||||||||||||    
T  11500767 tcttcgaaagaagagatgttaaaacgacggaac 11500735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 226
Target Start/End: Complemental strand, 19522049 - 19522019
Alignment:
Q  196 ttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||||||||||||    
T  19522049 ttcgaaagaagagatgttaaaacgacggaac 19522019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 8925280 - 8925313
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  8925280 ttctttgaaagaagagatgttaaaacgacggaac 8925313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 23762401 - 23762434
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  23762401 ttctttgaaagaagagatgttaaaacgacggaac 23762434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 27734394 - 27734427
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  27734394 ttcttcgaaagaaaagatgttaaaacgacggaac 27734427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 33638017 - 33638050
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  33638017 ttcttcgaaagaaaagatgttaaaacgacggaac 33638050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 42826704 - 42826733
Alignment:
Q  197 tcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||||||||||||||    
T  42826704 tcgaaagaagagatgttaaaacgacggaac 42826733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 4425373 - 4425340
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||||||||||||||||||    
T  4425373 ttcttcgaaagaagagatgttaaaacgacggaac 4425340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 1072637 - 1072670
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  1072637 ttctttgaaagaagagatgttaaaacgacggaac 1072670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 14832383 - 14832350
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  14832383 ttcttcgaaagaaaagatgttaaaacgacggaac 14832350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 34321984 - 34321951
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||||||| |||||||    
T  34321984 ttcttcgaaagaagagatgttaaaacaacggaac 34321951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 35041983 - 35041951
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaa 225  Q
    ||||| |||||||||||||||||||||||||||    
T  35041983 ttctttgaaagaagagatgttaaaacgacggaa 35041951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 33931126 - 33931068
Alignment:
Q  168 ttcaataatatattcgatnnnnnnnttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||       ||||||||||||||||||||||||| ||||||||    
T  33931126 ttcaataatatattcgataaaaaaattcttcgaaagaagagatgttaaaatgacggaac 33931068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 34373724 - 34373756
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaa 225  Q
    |||||||||||||||||||||||||||||||||    
T  34373724 ttcttcgaaagaagagatgttaaaacgacggaa 34373756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 4883058 - 4883025
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  4883058 ttctttgaaagaagagatgttaaaacgacggaac 4883025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 10511719 - 10511752
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||||||||| |||||    
T  10511719 ttcttcgaaagaagagatgttaaaacgatggaac 10511752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 17997446 - 17997413
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  17997446 ttctttgaaagaagagatgttaaaacgacggaac 17997413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 20995233 - 20995266
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  20995233 ttctttgaaagaagagatgttaaaacgacggaac 20995266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 33706111 - 33706144
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  33706111 ttcttcgaaagaaaagatgttaaaacgacggaac 33706144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 41781795 - 41781762
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||||||||| ||||||||    
T  41781795 ttcttcgaaagaagagatgttaaaatgacggaac 41781762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 19395640 - 19395608
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| |||||||||||||||||||||||||||    
T  19395640 tcttcaaaagaagagatgttaaaacgacggaac 19395608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 19448873 - 19448841
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaa 225  Q
    |||||| ||||||||||||||||||||||||||    
T  19448873 ttcttcaaaagaagagatgttaaaacgacggaa 19448841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 12245201 - 12245259
Alignment:
Q  168 ttcaataatatattcgatnnnnnnnttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||       |||||||||||||||||| |||||||||||||||    
T  12245201 ttcaataatatattcgataaaaaaattcttcgaaagaagagatattaaaacgacggaac 12245259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 44407279 - 44407247
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||||||||||||||    
T  44407279 tcttcgaaagaagagatgttaaaacgacggaac 44407247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 17672372 - 17672343
Alignment:
Q  197 tcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||||||||||||||    
T  17672372 tcgaaagaagagatgttaaaacgacggaac 17672343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 24294856 - 24294823
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||| ||||||||||||||||||    
T  24294856 ttcttcgaaagaagatatgttaaaacgacggaac 24294823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 52310758 - 52310725
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  52310758 ttcttcgaaagaaaagatgttaaaacgacggaac 52310725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 39760073 - 39760105
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaa 225  Q
    ||||||||||||||| |||||||||||||||||    
T  39760073 ttcttcgaaagaagatatgttaaaacgacggaa 39760105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 29694 - 29726
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||||||||||||||    
T  29694 tcttcgaaagaagagatgttaaaacgacggaac 29726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 54513701 - 54513669
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||||||||||||||    
T  54513701 tcttcgaaagaagagatgttaaaacgacggaac 54513669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 21698883 - 21698963
Alignment:
Q  147 aaactagttacaaacccgtgct-tcaataatatattcgatnnnnnnnttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||  |||||||  ||||||||        |||| ||||||||||||||||||||||||||||    
T  21698883 aaactagttacaaacccgtgcgatcaataacgtattcgataaaaaaaatctttgaaagaagagatgttaaaacgacggaac 21698963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 31368382 - 31368415
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  31368382 ttctttgaaagaagagatgttaaaacgacggaac 31368415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 32756448 - 32756390
Alignment:
Q  168 ttcaataatatattcgatnnnnnnnttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||||||||       |||||| |||||||||||| ||||||||||||||    
T  32756448 ttcaataatatattcgataaaaaaattcttcaaaagaagagatggtaaaacgacggaac 32756390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 39093241 - 39093208
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  39093241 ttcttcgaaagaaaagatgttaaaacgacggaac 39093208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 40824009 - 40824042
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  40824009 ttcttcgaaagaaaagatgttaaaacgacggaac 40824042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 50770613 - 50770646
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  50770613 ttctttgaaagaagagatgttaaaacgacggaac 50770646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 52842498 - 52842465
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  52842498 ttcttcgaaagaaaagatgttaaaacgacggaac 52842465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 48988969 - 48988937
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| |||||||||||||||||||    
T  48988969 tcttcgaaagaagtgatgttaaaacgacggaac 48988937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 17066 - 17033
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||| ||||||||||||||||||||||||||||    
T  17066 ttctttgaaagaagagatgttaaaacgacggaac 17033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 12268 - 12301
Alignment:
Q  193 ttcttcgaaagaagagatgttaaaacgacggaac 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  12268 ttcttcgaaagaaaagatgttaaaacgacggaac 12301  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 101626 - 101594
Alignment:
Q  194 tcttcgaaagaagagatgttaaaacgacggaac 226  Q
    |||||||||||||||||||||||||||| ||||    
T  101626 tcttcgaaagaagagatgttaaaacgacagaac 101594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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