View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15489_high_13 (Length: 309)
Name: NF15489_high_13
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 53 - 296
Target Start/End: Original strand, 44155031 - 44155276
Alignment:
| Q |
53 |
ctctctcaaagtctaatat--acacaactttgaacgttgaaattattaaaactgcaccgtaaccacattgagttatatatatacaatgtcatcacaaatg |
150 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44155031 |
ctctctcaaagcctaatatatacacaactttcaacgttgaaattattaaaactgcaccgtaaccacattgagttatatatatacaatgtcatcacaaatg |
44155130 |
T |
|
| Q |
151 |
agtggtaccaataataagatgaagaatattattcaggagactgagcttacccttggtcttccaggtaccaaaactgcaggcataaaacgtagcttctctc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44155131 |
agtggtaccaataataagatgaagaatattattcaggagactgagcttacccttggtcttccaggtaccaaaactgcaggcataaaacgtagcttctctc |
44155230 |
T |
|
| Q |
251 |
aaactcaccttgatattcatattgccacctcaacttctagtacttc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44155231 |
aaactcaccttgatattcatattgccacctcaacttctagtacttc |
44155276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44154215 - 44154275
Alignment:
| Q |
1 |
ctcgcacacctcacccacccatagcataatataaggcacatgactctaatatctctctcaa |
61 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44154215 |
ctcgcacacctcacccacccataacataatataaggcacatgactctaatatctctctcaa |
44154275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University