View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15489_high_14 (Length: 307)

Name: NF15489_high_14
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15489_high_14
NF15489_high_14
[»] chr2 (6 HSPs)
chr2 (1-282)||(44148795-44149081)
chr2 (209-272)||(6767778-6767841)
chr2 (221-268)||(11759790-11759837)
chr2 (204-259)||(45000422-45000477)
chr2 (232-272)||(34433318-34433358)
chr2 (232-272)||(42089540-42089580)
[»] chr5 (1 HSPs)
chr5 (209-265)||(29923010-29923066)
[»] chr7 (1 HSPs)
chr7 (221-272)||(40491681-40491732)
[»] chr4 (4 HSPs)
chr4 (209-272)||(38740293-38740356)
chr4 (221-287)||(22250314-22250380)
chr4 (209-251)||(44952880-44952922)
chr4 (209-249)||(49979816-49979856)
[»] chr3 (4 HSPs)
chr3 (209-259)||(30958153-30958203)
chr3 (209-259)||(30973965-30974015)
chr3 (223-272)||(1441340-1441389)
chr3 (232-272)||(31084254-31084294)
[»] chr8 (3 HSPs)
chr8 (223-252)||(7601884-7601913)
chr8 (224-272)||(10368068-10368116)
chr8 (209-249)||(28588910-28588950)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 44149081 - 44148795
Alignment:
Q  1 ataagctacgatcagttgcatttggatttcggtcaatctgatttcctcttacgcccgtgttctatttgcggtgttc-----actcctggaaatgtagaag 95  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  44149081 ataagctacgatcagttgcatttggatttcgttcaatctgatttcctcttacgcccgtgttctatttgcggtgttcggttcactcctggaaatgtagaag 44148982  T
Q  96 acgagaaattgcacgcgcagtttcacaaacgttttacacaaggaatccaatttagggtatctaatttaattttccactttcataatctccattatttgat 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44148981 acgagaaattgcacgcgcagtttcacaaacgttttacacaaggaatccaatttagggtatctcatttaattttccactttcataatctccattatttgat 44148882  T
Q  196 tcctatgttttgtttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgat 282  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44148881 tcctacgttttgtttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgat 44148795  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 6767841 - 6767778
Alignment:
Q  209 ttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattt 272  Q
    ||||||||||||||||||||||||||||||| ||| ||||| || |||||| || || ||||||    
T  6767841 ttttgaataaactgattttgtaaaattgattgtgattaaaaatgagttgaatgtaaagtgattt 6767778  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 11759790 - 11759837
Alignment:
Q  221 tgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattg 268  Q
    ||||||||||||||||||||||| |||||||| |||||| || |||||    
T  11759790 tgattttgtaaaattgattttgattaaaagtgagttgaaggtaaattg 11759837  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 45000422 - 45000477
Alignment:
Q  204 tttgtttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaa 259  Q
    |||| ||||||||||| ||||| |||||||||||||||  ||||||||| ||||||    
T  45000422 tttgattttgaataaattgattatgtaaaattgattttacctaaaagtgagttgaa 45000477  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 34433318 - 34433358
Alignment:
Q  232 aattgattttgactaaaagtgtgttgaacgtgaattgattt 272  Q
    |||||||||||| |||||||| |||||| ||||||||||||    
T  34433318 aattgattttgattaaaagtgagttgaatgtgaattgattt 34433358  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 42089540 - 42089580
Alignment:
Q  232 aattgattttgactaaaagtgtgttgaacgtgaattgattt 272  Q
    |||||||||||| |||||||| |||||| ||||||||||||    
T  42089540 aattgattttgattaaaagtgagttgaatgtgaattgattt 42089580  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 29923066 - 29923010
Alignment:
Q  209 ttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaa 265  Q
    |||||||| || ||||| |||||||||||||||||||| ||||| |||||| |||||    
T  29923066 ttttgaatgaattgattatgtaaaattgattttgactataagtgagttgaatgtgaa 29923010  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 40491732 - 40491681
Alignment:
Q  221 tgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattt 272  Q
    ||||| |||||||||||||||||||||||||| |||||| || || ||||||    
T  40491732 tgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgattt 40491681  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 38740293 - 38740356
Alignment:
Q  209 ttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattt 272  Q
    |||||||| || ||||||||||||||||||||||  |||||||| ||||||  |||| ||||||    
T  38740293 ttttgaatgaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgattt 38740356  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 22250380 - 22250314
Alignment:
Q  221 tgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatt 287  Q
    ||||| ||||||||||||| |||||||||| | |||||| ||||| ||||||  |||| ||||||||    
T  22250380 tgattctgtaaaattgattatgactaaaagcgagttgaatgtgaagtgatttacatttggatacatt 22250314  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 44952922 - 44952880
Alignment:
Q  209 ttttgaataaactgattttgtaaaattgattttgactaaaagt 251  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||    
T  44952922 ttttgaataaattgattttataaaattgattatgactaaaagt 44952880  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 49979856 - 49979816
Alignment:
Q  209 ttttgaataaactgattttgtaaaattgattttgactaaaa 249  Q
    ||||||||||| | ||| |||||||||||||||||||||||    
T  49979856 ttttgaataaattaattatgtaaaattgattttgactaaaa 49979816  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 30958203 - 30958153
Alignment:
Q  209 ttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaa 259  Q
    |||||||| || |||||||||||||||||||||| ||||| ||| ||||||    
T  30958203 ttttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaa 30958153  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 30974015 - 30973965
Alignment:
Q  209 ttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaa 259  Q
    |||||||| || |||||||||||||||||||||| ||||| ||| ||||||    
T  30974015 ttttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaa 30973965  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 1441340 - 1441389
Alignment:
Q  223 attttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattt 272  Q
    ||||||||||||||||| || ||||||||| ||||||||| || ||||||    
T  1441340 attttgtaaaattgattctgtctaaaagtgagttgaacgtaaagtgattt 1441389  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 31084294 - 31084254
Alignment:
Q  232 aattgattttgactaaaagtgtgttgaacgtgaattgattt 272  Q
    |||||||||||| |||||||| |||||| ||||||||||||    
T  31084294 aattgattttgattaaaagtgagttgaatgtgaattgattt 31084254  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 7601884 - 7601913
Alignment:
Q  223 attttgtaaaattgattttgactaaaagtg 252  Q
    ||||||||||||||||||||||||||||||    
T  7601884 attttgtaaaattgattttgactaaaagtg 7601913  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 10368116 - 10368068
Alignment:
Q  224 ttttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattt 272  Q
    |||||||||||||||||||| |||||||| |||||| || || ||||||    
T  10368116 ttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgattt 10368068  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 28588910 - 28588950
Alignment:
Q  209 ttttgaataaactgattttgtaaaattgattttgactaaaa 249  Q
    ||||||||||| ||||||| ||| |||||||||||||||||    
T  28588910 ttttgaataaattgattttataagattgattttgactaaaa 28588950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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