View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15489_high_25 (Length: 237)
Name: NF15489_high_25
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_high_25 |
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| [»] chr8 (8 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 1962786 - 1962553
Alignment:
| Q |
4 |
ccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggataaagcaaccccttgtggtaggtca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1962786 |
ccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggctaaagcaaccccttgtggtaggtca |
1962687 |
T |
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| Q |
104 |
ttagagttcactggtggaagaaaagtacagctgatgtttgattgaagagtttcaagtattgtttttgaatcagttgggagagaaccaagtgagggaatga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1962686 |
ttagagttcactggtggaagaaaagtacagctgatgtttgatggaagagtttcaagtattgtttttgaatcagttgggagagaaccaagtgagggaatga |
1962587 |
T |
|
| Q |
204 |
agcatgtgacatgaaagtatggatgaagctgaac |
237 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1962586 |
agcatgtgacatgaaagtatggatgaagctgaac |
1962553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2015640 - 2015876
Alignment:
| Q |
1 |
tgtccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggataaagcaaccccttgtggtagg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
2015640 |
tgtctttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgagtcagtgtgagctgaagttgaagtactaaagcaatcccttgtggtagg |
2015739 |
T |
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| Q |
101 |
tcattagagttcactggtggaagaaaagtacagctgatgtttgattgaagagtttcaagtattgtttttgaatcagttgggagagaaccaagtgagggaa |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2015740 |
tcattggagttcactggtggaagaaaagtacagctgatgtttgatggaagagtttgaaggattgtttttgaatcagttgggagagaaccaagtgagggaa |
2015839 |
T |
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| Q |
201 |
tgaagcatgtgacatgaaagtatggatgaagctgaac |
237 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |
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| T |
2015840 |
tgaagcatgtgacatgaaagtttggatgaagctgaac |
2015876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2019023 - 2019259
Alignment:
| Q |
1 |
tgtccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgagttagtgtgagctgaagttgaagggataaagcaaccccttgtggtagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||||||| ||||||||||| | |
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| T |
2019023 |
tgtccttaaagttaaggacttcaaggcctgatgtatagatggcagtgagtgaattactgtgagctgaatttgaagtactaaagcaatcccttgtggtaag |
2019122 |
T |
|
| Q |
101 |
tcattagagttcactggtggaagaaaagtacagctgatgtttgattgaagagtttcaagtattgtttttgaatcagttgggagagaaccaagtgagggaa |
200 |
Q |
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|| || ||| |||||| |||||||||||||||| ||||||||||| ||||||||| || || ||||||||||| ||||||||||| ||| |||||||| |
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| T |
2019123 |
tctttggagctcactgatggaagaaaagtacagttgatgtttgatggaagagtttgaatgatggtttttgaatcggttgggagagactcaattgagggaa |
2019222 |
T |
|
| Q |
201 |
tgaagcatgtgacatgaaagtatggatgaagctgaac |
237 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
2019223 |
tgaaacatgtgacatgaaagtatggatgaagctgaac |
2019259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 2005333 - 2005482
Alignment:
| Q |
88 |
cccttgtggtaggtcattagagttcactggtggaagaaaagtacagctgatgtttgattgaagagtttcaagtattgtttttgaatcagttgggagagaa |
187 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||| ||||||||| ||| || | ||||| ||||| | |||| |
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| T |
2005333 |
cccttgtggtaggtcattagggttcacaggtggaagaaaagtatggttgatgtttgatggaagagtttgaaggatagattttgtggtagttgagggagat |
2005432 |
T |
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| Q |
188 |
ccaagtgagggaatgaagcatgtgacatgaaagtatggatgaagctgaac |
237 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
2005433 |
ccaagtgagggaatgaaacatgtgacatgaaagtttggatgaagttgaac |
2005482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 2008713 - 2008862
Alignment:
| Q |
88 |
cccttgtggtaggtcattagagttcactggtggaagaaaagtacagctgatgtttgattgaagagtttcaagtattgtttttgaatcagttgggagagaa |
187 |
Q |
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|||||||||||||||||| | |||||| |||||||||||||| | ||||||||||| ||||||||| ||| || | ||||| || ||| | |||| |
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| T |
2008713 |
cccttgtggtaggtcattggggttcacaggtggaagaaaagtgtggttgatgtttgatggaagagtttgaaggatagattttgtggcatttgagggagat |
2008812 |
T |
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| Q |
188 |
ccaagtgagggaatgaagcatgtgacatgaaagtatggatgaagctgaac |
237 |
Q |
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||||| | ||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
2008813 |
ccaagcgtgggaatgaaacatgtgacatgaaagtttggatgaagctgaac |
2008862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 1968302 - 1968153
Alignment:
| Q |
88 |
cccttgtggtaggtcattagagttcactggtggaagaaaagtacagctgatgtttgattgaagagtttcaagtattgtttttgaatcagttgggagagaa |
187 |
Q |
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|||||||||||||||||| | ||||| |||||||||||||| | ||||||||||| ||||||||| ||| || | ||||| || ||| | |||| |
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| T |
1968302 |
cccttgtggtaggtcattgggattcacaggtggaagaaaagtgtggttgatgtttgatggaagagtttgaaggatagattttgtggcatttgagggagat |
1968203 |
T |
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| Q |
188 |
ccaagtgagggaatgaagcatgtgacatgaaagtatggatgaagctgaac |
237 |
Q |
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||||||| ||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
1968202 |
ccaagtgtgggaatgaaacatgtgacatgaaagtctggatgaagttgaac |
1968153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 237
Target Start/End: Original strand, 2013378 - 2013409
Alignment:
| Q |
206 |
catgtgacatgaaagtatggatgaagctgaac |
237 |
Q |
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| T |
2013378 |
catgtgacatgaaagtatggatgaagctgaac |
2013409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 2012417 - 2012474
Alignment:
| Q |
177 |
ttgggagagaaccaagtgagggaatgaagcatgtgacatgaaagtatggatgaagctg |
234 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||||||||| || ||||||||||| |
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|
| T |
2012417 |
ttgggggagaaccaagtgtgggaatgatacatgtgacatgaatgtccggatgaagctg |
2012474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 5901881 - 5901732
Alignment:
| Q |
88 |
cccttgtggtaggtcattagagttcactggtggaagaaaagtacagctgatgtttgattgaagagtttcaagtattgtttttgaatcagttgggagagaa |
187 |
Q |
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|||||| |||||||| || | ||||| |||||||||||||| ||| ||||||||| ||||||||| ||| | || ||||| || ||| | | || |
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| T |
5901881 |
cccttgaggtaggtcgttgggattcacaggtggaagaaaagtgtagccaatgtttgatggaagagtttgaaggaatgactttgaggcacttgagggtgat |
5901782 |
T |
|
| Q |
188 |
ccaagtgagggaatgaagcatgtgacatgaaagtatggatgaagctgaac |
237 |
Q |
| |
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||||||| ||||||||||| ||||||||||||| |||||| |||||||| |
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| T |
5901781 |
ccaagtgtaggaatgaagcaagtgacatgaaagtctggatggagctgaac |
5901732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 16565793 - 16565749
Alignment:
| Q |
185 |
gaaccaagtgagggaatgaagcatgtgacatgaaagtatggatga |
229 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||| | ||||||| |
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| T |
16565793 |
gaaccaagtgagggaatgatgcaagtgacatgaaaatttggatga |
16565749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 16599869 - 16599913
Alignment:
| Q |
185 |
gaaccaagtgagggaatgaagcatgtgacatgaaagtatggatga |
229 |
Q |
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||||||||||||||||||| ||| ||||||||||| | ||||||| |
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| T |
16599869 |
gaaccaagtgagggaatgatgcaagtgacatgaaaatttggatga |
16599913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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