View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15489_low_1 (Length: 788)
Name: NF15489_low_1
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 788
Target Start/End: Complemental strand, 37304788 - 37304000
Alignment:
| Q |
1 |
taagcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtatttcatttaattaatttggaggnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37304788 |
taagcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtatttcatttaattaatttggaggattt |
37304689 |
T |
|
| Q |
101 |
nnnnnnnnnnnnnnnnnnggttgaaaaatgaagagtacttagaatgatttatannnnnnnnnnn-gtttgcagactcaacaggagaggcatgagaatact |
199 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37304688 |
tttatttattttatttttggttgaaaaatgaagagtacttagaatgatttatattttttttttttgtttgcagactcaacaggagaggcatgagaatact |
37304589 |
T |
|
| Q |
200 |
tcacttagaactgaaaatgagaaacttcgcgctgataacatgaggtttagagaagctctaagtaatgcttcttgtcctaattgtggtggaccaactgcta |
299 |
Q |
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| T |
37304588 |
tcacttagaactgaaaatgagaaacttcgcgctgataacatgaggtttagagaagctctaagtaatgcttcttgtcctaattgtggtggaccaactgcta |
37304489 |
T |
|
| Q |
300 |
tcggagaaacgtcgtttgatgaacatcacttgaggattgaaaattctcgccttcgagaagaggtatacattcatcgcattgattcaaaaactacaccaag |
399 |
Q |
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| T |
37304488 |
tcggagaaatgtcgtttgatgaacatcacttgaggattgaaaattctcgccttcgagaagaggtatacattcatcgcattgattcaaaaactacaccaag |
37304389 |
T |
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| Q |
400 |
tttatggtgcgattgatagacacatatatcgagaccaatctggttgaactaaatgcggttaaaaaatgagataacaaatacattcgaggtcttggatccc |
499 |
Q |
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| T |
37304388 |
tttatggtgcgattgatagacacatatatcgagaccaatctggttgaactaaatgcggttaaaaaatgagataacaaatacattcgaggtcttggatccc |
37304289 |
T |
|
| Q |
500 |
ctacaacagttgcacggtgcagcaacgctattgtaggggatcaaaacctatatttttcggcgttcnnnnnnnggatttgattaaaatcaactcaagnnnn |
599 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| | || |||||||||||| || |
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| T |
37304288 |
ctacaacagttgcacggtgcaacaacactattgtaggggatcgaaacctatatttttcggcgtt-ggaaaaagtatgagattaaaatcaatgcagatttt |
37304190 |
T |
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| Q |
600 |
nnngtctccacgacctaagataatctccgattaatcatattaatttaatttcaattcactaaagaataaaatttgcaaaacgactttggttttatcaaaa |
699 |
Q |
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|||||||||||| ||| |||| || || |||||||||||||||||| |||||||||||| |||||||||||||| | |||||| ||||||||||| |
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| T |
37304189 |
gttgtctccacgaccaaagttaatatcgcatcaatcatattaatttaattgtaattcactaaagtataaaatttgcaaagctactttgtttttatcaaaa |
37304090 |
T |
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| Q |
700 |
tttcgttttaaagtgattgacctattgttattctatctctatcatgat-aaaaaatcttcttcatgattaactatattttaaccttcttt |
788 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| |
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| T |
37304089 |
tttcgttttaaagtgattgacctattgttattctatctctatcatgataaaaaaatcttcttcatgatcaactatattttatccttcttt |
37304000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 9e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 16825423 - 16825536
Alignment:
| Q |
230 |
gctgataacatgaggtttagagaagctctaagtaatgcttcttgtcctaattgtggtggaccaactgctatcggagaaacgtcgtttgatgaacatcact |
329 |
Q |
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|||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||| ||||| ||||| || |||| ||| |||||||||||||| | |
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| T |
16825423 |
gctgataacatgaggtatagagaagctcttagcaatgcttcatgtcctaattgtggtggtccaacagctataggtgaaatgtcatttgatgaacatcatt |
16825522 |
T |
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| Q |
330 |
tgaggattgaaaat |
343 |
Q |
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| T |
16825523 |
tgaggcttgaaaat |
16825536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 16825198 - 16825272
Alignment:
| Q |
1 |
taagcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtat |
75 |
Q |
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||||||||||||||||| | ||||| |||||||| |||||||||||||| |||||| | |||||||||||||||| |
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| T |
16825198 |
taagcagagagttagggcttgagcctttgcaagtcaagttttggtttcaaaacaaaaggactcaaatgaaggtat |
16825272 |
T |
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