View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15489_low_12 (Length: 344)
Name: NF15489_low_12
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 43192101 - 43191781
Alignment:
| Q |
19 |
aggatactctccggtcatgggagggtccagtagaatctcaatcattgatttggtcgacctagattcatttaaaagcataaaaaatcaattgaatgatcat |
118 |
Q |
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||||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
43192101 |
aggatcctctccggtcacgggagggtccagtggaatctcaaccattgatttggtcgacctagattcatttaaaagcataaaagatcaattgaatgattat |
43192002 |
T |
|
| Q |
119 |
gattgaaactggacagcctgcagtggtattctcacaggagaggatccctgtccaacattttatgtatattcttttgttacgtgattcaatctcttttgta |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43192001 |
gattgaaactggacagcctgcagtggtattctcagaggagaggatccctgcccaacattttatgtatattcttttgttacttgattcaatctcttttgta |
43191902 |
T |
|
| Q |
219 |
actgaccttccttcaaggtgttgatttcgctcattaaacaccacacatatgcttagttgtacacctatgtgtacatcaaatcactaattagggtcgtgta |
318 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43191901 |
accgaccttccttcaagttgttgatttcgctcattaaacaccacacatatgcttagttgtacacctatgtgtacatcaaatcactaattagggtcgtgta |
43191802 |
T |
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| Q |
319 |
gtctc---accttcttcatct |
336 |
Q |
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||||| ||||||||||||| |
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| T |
43191801 |
gtctcatgaccttcttcatct |
43191781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 26635394 - 26635546
Alignment:
| Q |
16 |
gagaggatactctccggtcatgggagggtccagtagaatctcaatcattgatttggtcgacctagattcatttaaaagcataaaaaatcaattgaatgat |
115 |
Q |
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| T |
26635394 |
gagaggatcctctctagtcactggagggtccagtggaatcccaaccattgatttggctgacctgggttcattaaaaagcataaaagaccaattgaatggt |
26635493 |
T |
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| Q |
116 |
catgattgaaactggacagcctgcagtggtattctcacaggagaggatccctg |
168 |
Q |
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| T |
26635494 |
catgattgaaactggatagcctgcagtagcattctcacaggagaggatccctg |
26635546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 43027215 - 43027080
Alignment:
| Q |
16 |
gagaggatactctccggtcatgggagggtccagtagaatctcaatcattgatttggtcgacctagattcatttaaaagcataaaaaatcaattgaatgat |
115 |
Q |
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|||||||| |||||| ||| |||||||||||| ||||| ||| |||||||||||| ||||||| |||||| |||||||||||| || |
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| T |
43027215 |
gagaggatcctctccaatcactggagggtccagtggaatcccaaccattgatttggttgacctaggttcattgaaaagcataaaagat------------ |
43027128 |
T |
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| Q |
116 |
catgattgaaactggacagcctgcagtggtattctcacaggagaggatccctg |
168 |
Q |
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| T |
43027127 |
-----ttgaaactggacagcctgcagtggtattctcacgggagaggatccctg |
43027080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 46889451 - 46889557
Alignment:
| Q |
61 |
cattgatttggtcgacctagattcatttaaaagcataaaaaatcaattgaatgatcatgattga---aactggacagcctgcagtggtattctcacagga |
157 |
Q |
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||||||||||| ||||||| |||||| |||| ||||||| | ||| |||||||||||||||| |||||||||||||| ||||||||||||||| || |
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| T |
46889451 |
cattgatttggctgacctaggttcattgaaaaacataaaagactaatggaatgatcatgattgaaataactggacagcctggagtggtattctcacatga |
46889550 |
T |
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| Q |
158 |
gaggatc |
164 |
Q |
| |
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|| |||| |
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| T |
46889551 |
gatgatc |
46889557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 17220788 - 17220716
Alignment:
| Q |
52 |
aatctcaatcattgatttggtcgacctagattcatttaaaagcataaaaaatcaattgaatgatcatgattga |
124 |
Q |
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||||||| ||||||||||| || |||| |||||| |||| ||||||| | |||||||||| |||||||||| |
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| T |
17220788 |
aatctcagtcattgatttgactgatctaggttcattaaaaaacataaaagaccaattgaatggtcatgattga |
17220716 |
T |
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