View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15489_low_13 (Length: 324)
Name: NF15489_low_13
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 12703274 - 12703562
Alignment:
| Q |
1 |
caatggaagacgagtttgaatagcagcttctgtttcacaaagtagtacacattagattttgtaaacaaggtttaaacaacacagtaataaacaatgcagt |
100 |
Q |
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| T |
12703274 |
caatggaagacgagttttaatagcatcttctgtttcacaaagtagtacacattagattttgtaaacaaggtttaaacaacacagcaataaacaatgcagt |
12703373 |
T |
|
| Q |
101 |
taacaagtttctaagcgatctattcccaccatgatcttgattaggtaacaaggtgcacctcttcctcttgctgctttgagtactgtcagaggaataaggc |
200 |
Q |
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| T |
12703374 |
taacaagtttctaagctttct-----caccatgatcttgattaggtaacaaggtgcacctctttctcttgctgctttgagtactgtcagaggaataaggc |
12703468 |
T |
|
| Q |
201 |
tcttgaggagaagagacaggttggtcaagttcctcagtaataccactcctttcaagttgttcattctcataatcttctctctttaccaacttcc |
294 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||| |
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| T |
12703469 |
tcttgaggtgaagagacaggttgttcaagttcctcagtaataccactcctttcaagttgttcattctcataatcttcacccattagcaacttcc |
12703562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 274
Target Start/End: Original strand, 8207220 - 8207427
Alignment:
| Q |
62 |
taaacaaggtttaaacaacacagtaataaacaatgcagttaacaagtttctaagcgatctattcccaccatgatcttgattaggtaacaaggtgcacctc |
161 |
Q |
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||||||||| ||||||||||||||||| ||||||| | || || |||||||||| ||| ||||||||||||| |||| ||| ||||| || |
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| T |
8207220 |
taaacaagggttaaacaacacagtaatgaacaatgtaattgactggtttctaagctttct-----caccatgatcttggctaggaaactcggtgccccgt |
8207314 |
T |
|
| Q |
162 |
ttcctcttgctgctttgagtactgtcagaggaataaggctcttgaggagaagagacaggttggtcaagttcctcagtaataccactcctttcaagttgtt |
261 |
Q |
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|||||||| |||||||||| ||| || || || || ||||||||||||||| |||||||||| ||||||||||| || |||||||||||||| ||||||| |
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| T |
8207315 |
ttcctcttactgctttgagaactatccgaagagtagggctcttgaggagaacagacaggttgttcaagttcctcggttataccactcctttcgagttgtt |
8207414 |
T |
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| Q |
262 |
cattctcataatc |
274 |
Q |
| |
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||||||||||||| |
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| T |
8207415 |
cattctcataatc |
8207427 |
T |
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