View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15489_low_2 (Length: 651)
Name: NF15489_low_2
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 636
Target Start/End: Complemental strand, 27559893 - 27559258
Alignment:
| Q |
1 |
tcatcagaaaaaggtatgcttatcagaggttgttcagtagtggcagagtttagtctagttaatgttattattggacttgttgttctaagtagtgaaaaga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27559893 |
tcatcagaaaaaggtatgcttatcagaggttgttcagtagtggcagagtttagtctagttaatgttattattggacttgttgttctaagtaatgaaaaga |
27559794 |
T |
|
| Q |
101 |
agcacctgtctgtggctgttgtgcttgccaaattttatgttggatgttaataaaaaacctctttctctttactacaagatattcaaattcttgctcttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27559793 |
agcacctgtctgtggctgttgtgcttgccaaattttatgttggatgttaataaaaaacctctttctctttactacaagatattcaaatttttgctcttta |
27559694 |
T |
|
| Q |
201 |
acagaatgcatagttccagtctctagaatgtttgttatttccctcnnnnnnncgccttgcccgtgtttaaaagctgctgtttctccctgacctcctgtct |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559693 |
acagaatgcatagttccagtctctagaatgtttgttatttccctctttttttcgccttgcccgtgtttaaaagctgctgtttctccctgacctcctgtct |
27559594 |
T |
|
| Q |
301 |
tcattcctttgccttattatttcatgtaccgcttgttgattatcatgatgtgcatggcttggctccactattcctttaaaattcatttattttttcaagt |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27559593 |
tcattcctttgccttattattttatgtaccgcttgttgattataatgatgtgcatggcttggttccactattcctttaaaattcatttattttttcaagt |
27559494 |
T |
|
| Q |
401 |
gcttaattattgaaagcctcaaattttgtccatcaaagccgggaaaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctacattaag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559493 |
gcttaattattgaaagcctcaaattttgtccatcaaagccgggaaaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctacattaag |
27559394 |
T |
|
| Q |
501 |
agctaaacttctaggaagaccaacaaaggattgcttattttctgatcctgctagagatggaaagaggtaaaaaatccataattctctagctacctaactt |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
27559393 |
agctaaacttctaggaagaccaacaaaggattgcttattttctgatcctgctagagatggaaagaggtaaagaatccataattatctagctacctaactt |
27559294 |
T |
|
| Q |
601 |
tacttacttgacaaattgatatatcggattgttctt |
636 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
27559293 |
tacttacttgacaaattgatatatcgaattgttctt |
27559258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 436 - 633
Target Start/End: Original strand, 42351462 - 42351659
Alignment:
| Q |
436 |
aagccgggaaaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctacattaagagctaaacttctaggaagaccaacaaaggattgct |
535 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |
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| T |
42351462 |
aagcccggacaccacgacttcaatcttttgaagaagcttgtacttcctgacggttctatattaagagctaaacttccaggaagaccaaccaaggattgct |
42351561 |
T |
|
| Q |
536 |
tattttctgatcctgctagagatggaaagaggtaaaaaatccataattctctagctacctaactttacttacttgacaaattgatatatcggattgtt |
633 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
42351562 |
tattttctgatcctgctagagatggaaagaggtaaagaatccataattctctagctacctaactttaattacttgacaaattgatatatcagattgtt |
42351659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 298 - 430
Target Start/End: Complemental strand, 36662033 - 36661901
Alignment:
| Q |
298 |
tcttcattcctttgccttattatttcatgtaccgcttgttgattatcatgatgtgcatggcttggctccactattcctttaaaattcatttattttttca |
397 |
Q |
| |
|
|||||| | |||||||||||||||| ||||||| |||| ||||| | |||||||||||| |||| |||||| ||||||||||||||||||||||||||| |
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| T |
36662033 |
tcttcactgctttgccttattattttatgtaccacttgctgattttaatgatgtgcatgaattggttccactgttcctttaaaattcatttattttttca |
36661934 |
T |
|
| Q |
398 |
agtgcttaattattgaaagcctcaaattttgtc |
430 |
Q |
| |
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|| ||||||||| ||||||||||||||||||| |
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| T |
36661933 |
agaacttaattatagaaagcctcaaattttgtc |
36661901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 36667449 - 36667371
Alignment:
| Q |
9 |
aaaaggtatgcttatcagaggttgttcagtagtggcagagtttagtctagttaatgttattattggacttgttgttcta |
87 |
Q |
| |
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|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
36667449 |
aaaaggtatgctgatctgaagttgttcagtagtggcagagtttagtctagttaatgtaattattggactcgttattcta |
36667371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 86 - 303
Target Start/End: Complemental strand, 29409160 - 29408930
Alignment:
| Q |
86 |
taagtagtgaaaagaagcacctgtctgtggctgttgtgcttgccaaattttatgttggatgttaataaaaaacctctttctctttactacaagatattca |
185 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||| |
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| T |
29409160 |
taagtattgaaaagaagcacccgcctgtggctgttgtgcttaccaaattttatgttagatgttaactaaaaacctctttctctttgttacaagagattca |
29409061 |
T |
|
| Q |
186 |
aattcttgctctttaacagaatgca-------------tagttccagtctctagaatgtttgttatttccctcnnnnnnncgccttgcccgtgtttaaaa |
272 |
Q |
| |
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| || ||||| |||||||||||||| |||||||||||||||||||| | |||||||||||| | |||||||| ||||||||| |
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| T |
29409060 |
agtttttgctttttaacagaatgcagataatgtcatactagttccagtctctagaatgctagttatttccctcattttttccccttgcccatgtttaaaa |
29408961 |
T |
|
| Q |
273 |
gctgctgtttctccctgacctcctgtcttca |
303 |
Q |
| |
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| |||| || ||||||||||||||| |||| |
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| T |
29408960 |
tccgctgattgtccctgacctcctgtattca |
29408930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 29408866 - 29408771
Alignment:
| Q |
337 |
tgattatcatgatgtgcatggcttggctccactattcctttaaaattcatttattttttcaagtgcttaattattgaaagcctcaaattttgtcca |
432 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||| |
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|
| T |
29408866 |
tgattttcatgatgtgcatggattggttccactattcctttaaaattcatttaccttttcaagaacttaattatagaaagcctcaaattatgtcca |
29408771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 29409285 - 29409207
Alignment:
| Q |
9 |
aaaaggtatgcttatcagaggttgttcagtagtggcagagtttagtctagttaatgttattattggacttgttgttcta |
87 |
Q |
| |
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|||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||| ||| || |||||||| ||||| |
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| T |
29409285 |
aaaaggtatgctgatctggggttgttcagtagtggcagagcttagtctagttaatgtaattttttgacttgttattcta |
29409207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 24203625 - 24203719
Alignment:
| Q |
116 |
ctgttgtgcttgccaaattttatgttggatgttaataaaaaacctctttctctttactacaagatattcaaattc-ttgctctttaacagaatgca |
210 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||||| || |||||| ||||| ||||||||||||| |
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| T |
24203625 |
ctgttgtgctttccaaattttatgttagatgttaataaaaaacctctttctcattgctacaagatgtt-aaattctttgcttattaacagaatgca |
24203719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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