View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15489_low_23 (Length: 270)
Name: NF15489_low_23
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 56 - 245
Target Start/End: Original strand, 19267469 - 19267662
Alignment:
| Q |
56 |
ctttagaggaagtcattgtgaaaataatggctgaagtgaaggctcaaaatccttccattaacacacataaacttcatcatcctcctggaccagtgaatat |
155 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19267469 |
ctttagaggaagtcattgggaaattaatggctgaagtaaagtctcaaaatccttccattaacacacataaacttcatcatcctcctggaccagcgaatat |
19267568 |
T |
|
| Q |
156 |
ctatgaaagaaagacgagaaaagaagcact------ttacaccggtgcaacttgctccaaatgaagaagaagatccataagatattgatcccatat |
245 |
Q |
| |
|
|| ||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19267569 |
ctctgaaagaaagacgag-aaagaagcacttattaattacaccggtgcaacttgctcc-aatgaagaagaagatccataagatattgatcccatat |
19267662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University