View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15489_low_26 (Length: 245)
Name: NF15489_low_26
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 19769401 - 19769636
Alignment:
| Q |
1 |
aactccaatgttaatgcattatgttatgattcattatgaaaggccgatgtttagcattattatgtgttgttttttagttaatgtattttaggaaggtacc |
100 |
Q |
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| T |
19769401 |
aactccaatgttaatgcattatgttatgattcattatgaaaggccgatgtttagcattattatgtgttgttttttagttaatgtattttaggaaggtacc |
19769500 |
T |
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| Q |
101 |
ttaattaacaattgtgtatccaataccgtggccgagtgagtgtacttttgtcgaactcaaaataacttagttgtgatgttttctcaaataacatctacgg |
200 |
Q |
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| T |
19769501 |
ttaattaacaattgtgtatccaataccgtggccgagtgagtgtacttttgtcgaactcaaaataacttagttgtgatgttttctcaaataacatctacgg |
19769600 |
T |
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| Q |
201 |
tagtttatatctcttcaatctacggtagtttccctc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
19769601 |
tagtttatatctcttcaatctacggtagtttccctc |
19769636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 32014063 - 32013859
Alignment:
| Q |
29 |
attcattatgaaaggccgatgtttagcattattatgtgttgttttttagttaatgtattttaggaaggtaccttaattaacaattgtgtatccaataccg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
32014063 |
attcattatgaaaggccgatgtttagcattattatgtgccgttttttagttaatgtattttatgaaggtaccttaattaagaattgtgtatccaataccg |
32013964 |
T |
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| Q |
129 |
tggccgagtgagtgtacttttgtcgaactcaaaataacttagttgtgatgttttctcaaataacatctacggtagtttatatctcttcaatctacggtag |
228 |
Q |
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| T |
32013963 |
tggccgagtgagtgtacttttgtcgaactcaaaataacttatttgtgatgttttctcaaataacatctacggtagtttatatctctttaatctacggtag |
32013864 |
T |
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| Q |
229 |
tttcc |
233 |
Q |
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||||| |
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| T |
32013863 |
tttcc |
32013859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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