View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15489_low_27 (Length: 239)
Name: NF15489_low_27
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 52350908 - 52351123
Alignment:
| Q |
19 |
accttcactaagcagaagggtggtaagacaatggaaactagatattggccttagtaactcactgttacatccaattacaatgaggtctttaagggatgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52350908 |
accttcactaagcagaagggtggtaagacaatggaaactagatattggccttagtaactgactgttacatccaattacaatgaggtctttaagggatgga |
52351007 |
T |
|
| Q |
119 |
aggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagacgagggaacatctcccccctttccattttcaataaccgttcaaagtttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52351008 |
aggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagac---ggaacatctcccgcctttccattttcaataaccgttcaaagtttg |
52351104 |
T |
|
| Q |
219 |
gcaaacctagtaacgagac |
237 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
52351105 |
gcaaacctagtaatgagac |
52351123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 30474337 - 30474484
Alignment:
| Q |
33 |
gaagggtggtaagacaatggaaactagatattggccttagtaactcactgttacatccaattacaatgaggtctttaagggatggaaggaattgcaacac |
132 |
Q |
| |
|
||||||||||||||| | |||| | || |||| || ||||||||| |||||||||||| |||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
30474337 |
gaagggtggtaagactacagaaattggagattgatctcagtaactcattgttacatccaaatacaatgaggtctttaagggatggaaggcatggcaacac |
30474436 |
T |
|
| Q |
133 |
aagtttagggcaaccacaaatggtcaaatcagaaagacgagggaacat |
180 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||| || ||||||| |
|
|
| T |
30474437 |
aagtttagggcaatcaataatggtcaaattagaaagaagaaggaacat |
30474484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 30522731 - 30522589
Alignment:
| Q |
74 |
aactcactgttacatccaattacaatgaggtctttaagggatggaaggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagacgag |
173 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||||| |||| |||| | ||||| ||||||||||||||||| |||| ||| | |||||| || | |
|
|
| T |
30522731 |
aactcattgttacatccatctacaatgagttctttaaacgatgaaaggtgtggcaacccaagtttagggcaaccaacgatggccaacttagaaaggcggg |
30522632 |
T |
|
| Q |
174 |
ggaacatctcccccctttccattttcaataaccgttcaaagtt |
216 |
Q |
| |
|
| || |||||||| |||||| |||||| |||||||| ||||| |
|
|
| T |
30522631 |
gaaaaatctcccctgtttccactttcaacaaccgttccaagtt |
30522589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 30563071 - 30562929
Alignment:
| Q |
74 |
aactcactgttacatccaattacaatgaggtctttaagggatggaaggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagacgag |
173 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||||| |||| |||| | ||||| ||||||||||||||||| |||| ||| | |||||| || | |
|
|
| T |
30563071 |
aactcattgttacatccatctacaatgagttctttaaacgatgaaaggtgtggcaacccaagtttagggcaaccaacgatggccaacttagaaaggcggg |
30562972 |
T |
|
| Q |
174 |
ggaacatctcccccctttccattttcaataaccgttcaaagtt |
216 |
Q |
| |
|
| || |||||||| |||||| |||||| |||||||| ||||| |
|
|
| T |
30562971 |
gaaaaatctcccctgtttccactttcaacaaccgttccaagtt |
30562929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 30429948 - 30430091
Alignment:
| Q |
71 |
agtaactcactgttacatccaattacaatgaggtctttaagggatggaaggaattgcaacacaagtttagggcaaccacaaatggtcaaatcagaaagac |
170 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| ||||||| |||| |||| || ||||| |||||||| |||||||| ||||| ||| | |||||| |
|
|
| T |
30429948 |
agtaactcattgttacatccatctacaatgagttctttaaaagatgaaaggcatggcaacccaagtttaaggcaaccaacaatggccaacttagaaaggt |
30430047 |
T |
|
| Q |
171 |
gagggaacatctcccccctttccattttcaataaccgttcaaagtt |
216 |
Q |
| |
|
| || || |||| ||| |||||| |||||| |||||||| ||||| |
|
|
| T |
30430048 |
ggggaaaaatct--cccatttccactttcaacaaccgttccaagtt |
30430091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 30399051 - 30399200
Alignment:
| Q |
57 |
tagatattggccttagtaactcactgttacatccaattacaatgaggtctttaagggatggaaggaattgcaacacaagtttagggcaaccacaaatggt |
156 |
Q |
| |
|
|||| |||| ||| ||||||||| |||||||||| | |||| |||| |||||| |||||||| || ||| |||||||||||||| | || | |
|
|
| T |
30399051 |
tagagattgacctcagtaactcattgttacatcccaatacatagagggatttaagagatggaagacatggcactccaagtttagggcaagctgtgattct |
30399150 |
T |
|
| Q |
157 |
caaatcagaaagacgagggaacatctcccccctttccattttcaataacc |
206 |
Q |
| |
|
||| |||||||||| ||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
30399151 |
caactcagaaagacaaggaaacatctcccctctttccactttcaataacc |
30399200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 30205602 - 30205658
Alignment:
| Q |
163 |
agaaagacgagggaacatctcccccctttccattttcaataaccgttcaaagtttgg |
219 |
Q |
| |
|
|||||||| ||| |||||||| || ||||||| ||||||||||| ||| |||||||| |
|
|
| T |
30205602 |
agaaagacaaggaaacatctcacctctttccactttcaataacccttctaagtttgg |
30205658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University