View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15489_low_29 (Length: 235)
Name: NF15489_low_29
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 19769227 - 19769007
Alignment:
| Q |
1 |
aacttaccaattaacattatgtctttcaagtcatcgaacagattagcagcaaaagaacatcatcagtgcgtctagtgtcacttggttacatctgcacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19769227 |
aacttaccaattaacattatgtctttcaagtcatcgaacagattagcagcaaaagaacatcatcagtgcgtctagtgtcacttggttacatctgcacaaa |
19769128 |
T |
|
| Q |
101 |
gcgtacatgatttataacatcacctatagactgaatttacctgaaaaaagacgggaacaaccaataggaatcagtcaggacacagtatgatcatgtcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19769127 |
gcgtacatgatttataacatcacctatagactgaatttacctgaaaaaagacgggaacaaccaataggaatcagtcaggacacagtatgatcatgtcata |
19769028 |
T |
|
| Q |
201 |
cacaatttgagtaagcatatt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
19769027 |
cacaatttgagtaagcatatt |
19769007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32014233 - 32014453
Alignment:
| Q |
1 |
aacttaccaattaacattatgtctttcaagtcatcgaacagattagcagcaaaagaacatcatcagtgcgtctagtgtcacttggttacatctgcacaaa |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32014233 |
aacttatcaattaacattatgcctttcaagtcatcgaacatattagcagcaaaagaacatcatcagtgcgtctagtgtcacttggttacatctgcacaaa |
32014332 |
T |
|
| Q |
101 |
gcgtacatgatttataacatcacctatagactgaatttacctgaaaaaagacgggaacaaccaataggaatcagtcaggacacagtatgatcatgtcata |
200 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
32014333 |
gcgtacatggcttataacatcacctgtagattgaatttacctgaaaaaagacgggaacaaccaataggaatcagtcaggacacaataagatcatgtcata |
32014432 |
T |
|
| Q |
201 |
cacaatttgagtaagcatatt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32014433 |
cacaatttgagtaagcatatt |
32014453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University