View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15489_low_3 (Length: 565)
Name: NF15489_low_3
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 7 - 550
Target Start/End: Original strand, 3918866 - 3919409
Alignment:
| Q |
7 |
tactcatatcttagcatcttcaaatgttaaaagagtgcaggcccgttggccattacctgaatagaaaatgtcaaattacctgagaagcaaagtgtctgtg |
106 |
Q |
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| T |
3918866 |
tactcatatcttagcatcttcaaatgttaaaagagtgcaggcccgttggccattacctgaatagaaaatgtcaaattacctgagaagcaaagtgtctgtg |
3918965 |
T |
|
| Q |
107 |
tccaggtgataaagtacttgaggctcggcccattgctctctcgagcaagatgcgcatggatttctccttctgtaggtgtagctgtagctgctcaacctgc |
206 |
Q |
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| T |
3918966 |
tccaggtgataaagtacttgaggctcggcccattgctctctcgagcaagatgcgcatggatttctccttctgtaggtgtagctgtagctgctcaacctgc |
3919065 |
T |
|
| Q |
207 |
atatcaacataggaactccaggaatcagtaaaatactatgccatggtcatcgtacagaaaacaagaacctatactatctttagttatcttttcagaatta |
306 |
Q |
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| T |
3919066 |
atatcaacataggaactccaggaatcagtaaaatactatgccatggtcatcgtacagaaaacaagaacctatactatctttagttatcttttcagaatta |
3919165 |
T |
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| Q |
307 |
aagctcaacgtttttcttcccagatgtttcagaacctaaatacacaatacacatctccgaaattaacaaggaatatggttttataaccattactttctan |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3919166 |
aagctcaacgtttttcttcccagatgtttcagaacctaaatacacaatacacatctccgaaattaacaaggaatatggttttataaccattactttctat |
3919265 |
T |
|
| Q |
407 |
nnnnnnccatggtgatttcacttaagacgcttctaaggtttgctttattgatataggctgtttcagaaattttctctttgatcccacaatatagtgaaaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3919266 |
ttttttccatggtgatttcacttaagacgcttctaaggtttgctttattgatataggctgtttcagaaattttctctttgatcccacaatatagtgaaaa |
3919365 |
T |
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| Q |
507 |
gagtatgccaaattgatttagtgaaacacatgatatcaataagt |
550 |
Q |
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| T |
3919366 |
gagtatgccaaattgatttagtgaaacacatgatatcaataagt |
3919409 |
T |
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