View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15489_low_30 (Length: 232)
Name: NF15489_low_30
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 21432794 - 21433001
Alignment:
| Q |
11 |
cacagactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatgc |
110 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21432794 |
cacacactgctaaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatgc |
21432893 |
T |
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| Q |
111 |
accattttatagaagttttacttgatgcatttccccatctgtgctgtgttttgaagtaaaaatttatctattttttcattgtaactttattgtattatta |
210 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21432894 |
accattttatagaagttttacttaatgcatttccccatctgtgc--tgttttgaagtaaaaattcatctattttttcattgtaactttattgtattatta |
21432991 |
T |
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| Q |
211 |
gtgaacaaga |
220 |
Q |
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|||||||||| |
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| T |
21432992 |
gtgaacaaga |
21433001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 27151606 - 27151817
Alignment:
| Q |
11 |
cacagactgctaaataccacttctcttcatcgtttgagccc-agaagaaatgcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatg |
109 |
Q |
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|||| |||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||| |||| ||||| | |||| |
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| T |
27151606 |
cacacactgctaaataccactccccttcatcatttgagccccagaagaaatgcatttaaaaatctatacagattctctagaaagtatatgccaccgaatg |
27151705 |
T |
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| Q |
110 |
caccattttatagaagttttacttgatgcatttccccatctgtgctgtgttt-tgaagtaaaaatttatctattttttcattgtaactttattgtattat |
208 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||| | ||| | ||||| ||||| ||||||||||| ||||||||||||| |||||| |
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| T |
27151706 |
caccattttataaaagttttacttgatgcatttccccatctctgctatttttatcaagtacaaattcatctattttttaattgtaactttatcttattat |
27151805 |
T |
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| Q |
209 |
tagtgaacaaga |
220 |
Q |
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|||||||||||| |
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| T |
27151806 |
tagtgaacaaga |
27151817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 26988726 - 26988829
Alignment:
| Q |
11 |
cacagactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggt-atgtgccaaccaatg |
109 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||| |
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| T |
26988726 |
cacacactgctaaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatg |
26988825 |
T |
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| Q |
110 |
cacc |
113 |
Q |
| |
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|||| |
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| T |
26988826 |
cacc |
26988829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 27076533 - 27076449
Alignment:
| Q |
11 |
cacagactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggta |
95 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27076533 |
cacacactgctaaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaactcatacagattctctagaaggta |
27076449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 27099625 - 27099529
Alignment:
| Q |
21 |
taaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggtatgtgccaaccaatgcaccattt |
117 |
Q |
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||||||||||||| ||||||| ||||| |||| |||||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27099625 |
taaataccacttcccttcatcctttgaacccaaaagaaatgcaattgaaaacctatacagattctctagaaggtatgtgccaactaatgcaccattt |
27099529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 27028044 - 27028128
Alignment:
| Q |
11 |
cacagactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggta |
95 |
Q |
| |
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|||| ||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27028044 |
cacacactgctaaataccacttttctttaccgtttgagctcagaagaaatgcatttaaaaacccatacagattctctagaaggta |
27028128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 27099492 - 27099452
Alignment:
| Q |
181 |
ttttttcattgtaactttattgtattattagtgaacaagat |
221 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
27099492 |
ttttttcattgtaactttatcttattattagtgaacaagat |
27099452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 34690802 - 34690905
Alignment:
| Q |
11 |
cacagactgctaaataccacttctcttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggt-atgtgccaaccaatg |
109 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||| |
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| T |
34690802 |
cacacactgctaaataccacttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatg |
34690901 |
T |
|
| Q |
110 |
cacc |
113 |
Q |
| |
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|||| |
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|
| T |
34690902 |
cacc |
34690905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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