View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15489_low_32 (Length: 223)
Name: NF15489_low_32
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39306155 - 39306365
Alignment:
| Q |
1 |
gacaaagttattaggttgaggacgaataccaagccatttgttatccacaaaagcttctagacctccaacttgatcttgaaaaagaatggtgactgaggtt |
100 |
Q |
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| T |
39306155 |
gacaaagttattaggttgaggacgaataccaagccatttgttatccacaaaagcttctagacctccaacttgatcttgaaaaagaatggtgactgaggtt |
39306254 |
T |
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| Q |
101 |
gggtcacaatgaggaccagtgccaagggcacctgcatggatgccactgcaaggtgggtaagagttgcacctcatcatagtttctgcatcttcaaaaaact |
200 |
Q |
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| T |
39306255 |
gggtcacaatgaggaccagtgccaagggcacctgcatggatgccactgcaaggtgggtaagagttgcacctcatcatagtttctgcatcttcaaaaaact |
39306354 |
T |
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| Q |
201 |
ttttatagtat |
211 |
Q |
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||||||||||| |
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| T |
39306355 |
ttttatagtat |
39306365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 39315176 - 39315344
Alignment:
| Q |
30 |
caagccatttgttatccacaaaagcttctagacctccaacttgatcttgaaaaagaatggtgactgaggttgggtcacaatgaggaccagtgccaagggc |
129 |
Q |
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| T |
39315176 |
caagccatttgttgtcagcaaaaacttcaagacctccaacttgatcttgaaggagaatagtgatagagattgggtcacaatgagggccattgccaagagc |
39315275 |
T |
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| Q |
130 |
acctgcatggatgccactgcaaggtgggtaagagttgcacctcatcatagtttctgcatcttcaaaaaa |
198 |
Q |
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| T |
39315276 |
accagtgaggttagcactgcaaggtggataaaagttgcatctcatcattgactcagcatcttcaaaaaa |
39315344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 44113925 - 44114017
Alignment:
| Q |
34 |
ccatttgttatccacaaaagcttctagacctccaacttgatcttgaaaaagaatggtgactgaggttgggtcacaatgaggaccagtgccaag |
126 |
Q |
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| T |
44113925 |
ccatttattatctgcaaaaacttcaagacctccaacttgatcttgatgaagaatggttagtgatgttgggtctgagtgagggccagtaccaag |
44114017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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