View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15489_low_33 (Length: 207)

Name: NF15489_low_33
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15489_low_33
NF15489_low_33
[»] chr7 (1 HSPs)
chr7 (13-177)||(12615114-12615278)
[»] chr2 (4 HSPs)
chr2 (22-120)||(26405347-26405445)
chr2 (33-118)||(37547132-37547217)
chr2 (14-122)||(20638712-20638820)
chr2 (33-69)||(42490554-42490590)
[»] chr3 (5 HSPs)
chr3 (14-122)||(21604968-21605075)
chr3 (14-118)||(21635979-21636083)
chr3 (14-66)||(44109781-44109833)
chr3 (14-66)||(53717046-53717098)
chr3 (14-79)||(47800052-47800117)
[»] chr1 (2 HSPs)
chr1 (14-101)||(36583572-36583658)
chr1 (14-122)||(48002819-48002927)
[»] chr4 (7 HSPs)
chr4 (14-121)||(38944608-38944715)
chr4 (14-122)||(17999185-17999293)
chr4 (22-96)||(20281312-20281386)
chr4 (19-70)||(3103039-3103090)
chr4 (132-188)||(16716234-16716291)
chr4 (33-122)||(33604002-33604091)
chr4 (14-79)||(48100223-48100288)
[»] chr6 (3 HSPs)
chr6 (14-122)||(8447955-8448062)
chr6 (14-122)||(8456759-8456866)
chr6 (14-122)||(793611-793719)
[»] chr5 (5 HSPs)
chr5 (14-102)||(873003-873091)
chr5 (14-66)||(4088175-4088227)
chr5 (21-66)||(7601995-7602040)
chr5 (49-122)||(38836524-38836597)
chr5 (14-70)||(32813277-32813332)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 12615114 - 12615278
Alignment:
Q  13 gaatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtag 112  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12615114 gaatatgagagagaggttgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaactag 12615213  T
Q  113 aggaaggactaaaacggtcttatatatttatcgcgtaagtattgaatcaaagttatctatcaaat 177  Q
     |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  12615214 gggaaggactaaaacggtcttatgtattaatcgcgtaagtattgaatcaaagttatctatcaaat 12615278  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 26405445 - 26405347
Alignment:
Q  22 agagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtagaggaagga 120  Q
    |||||||||| |||||||||||  ||||||||||||||||||||||||| || ||||| ||| | ||| |||||| ||||||| ||| ||| |||||||    
T  26405445 agagagggtgcctataaaagcattcatctttataagcaccatattaattggtttcacaatggaaatgcctatttaacatggtgctaaataggggaagga 26405347  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 37547217 - 37547132
Alignment:
Q  33 ctataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtagaggaag 118  Q
    |||||||||||||||| ||||||||||||||||||||| |||| | | |||  |||| ||||||||||| |||||| ||| |||||    
T  37547217 ctataaaagcacccatatttataagcaccatattaattggtattataatggaggtgcctatttatcatgatgttaaataggggaag 37547132  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 20638820 - 20638712
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtaga 113  Q
    |||| |||||||| |||| ||||||||||||||| || |||||||||| |||||||| || ||  | || | |||| |||||| ||||||| ||| |||     
T  20638820 aataggagagagatggtgcctataaaagcacccacctctataagcaccgtattaattggtgtcttaatgagggtgcctatttaacatggtgctaaatagg 20638721  T
Q  114 ggaaggact 122  Q
    |||||||||    
T  20638720 ggaaggact 20638712  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 42490590 - 42490554
Alignment:
Q  33 ctataaaagcacccatctttataagcaccatattaat 69  Q
    |||||||||| || |||||||||||||||||||||||    
T  42490590 ctataaaagctcctatctttataagcaccatattaat 42490554  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 21604968 - 21605075
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtaga 113  Q
    |||| ||||||||||||| |||||||||||| ||||| |||||||||| ||||||||| | ||||| | ||||||| ||||||  |||||| ||| |||     
T  21604968 aataggagagagagggtgtctataaaagcactcatctctataagcaccgtattaattaatgtcacaat-ggagtgcctatttagtatggtgctaaatagg 21605066  T
Q  114 ggaaggact 122  Q
    |||||||||    
T  21605067 ggaaggact 21605075  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 21635979 - 21636083
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtaga 113  Q
    |||| ||||||||||||| |||||||||||||||||| ||||| |||  ||||||||| | ||||| |||  |||| |||||| ||||||| ||| |||     
T  21635979 aataggagagagagggtgcctataaaagcacccatctctataatcactgtattaattaatgtcacaatggaggtgcctatttagcatggtgctaaatagg 21636078  T
Q  114 ggaag 118  Q
    |||||    
T  21636079 ggaag 21636083  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 44109781 - 44109833
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatatt 66  Q
    |||| ||||||||||||| |||||||||||| |||| |||||| |||||||||    
T  44109781 aataggagagagagggtgcctataaaagcacacatccttataaacaccatatt 44109833  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 53717098 - 53717046
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatatt 66  Q
    |||| ||||||||||||| |||||||| |||||| ||||||||||| ||||||    
T  53717098 aataggagagagagggtgcctataaaaacacccacctttataagcatcatatt 53717046  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 47800117 - 47800052
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcaca 79  Q
    |||| ||||||||||||| ||||||||| ||| |||| |||||||||| | |||||| || |||||    
T  47800117 aataggagagagagggtgcctataaaagtaccaatctctataagcaccgtgttaattggtgtcaca 47800052  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 36583658 - 36583572
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatg 101  Q
    |||| ||||| |||||||  ||||||||||| ||||||||||||||||||||||||| || ||||| |||| |||| |||||||||||    
T  36583658 aataggagagggagggtgcttataaaagcactcatctttataagcaccatattaattggtgtcaca-tgggggtgcctatttatcatg 36583572  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 48002927 - 48002819
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtaga 113  Q
    |||| ||||||||||||| |||||||||||| |||||||||||  ||| |||||||| || ||||| || | |||  |||||| ||||||| ||| |||     
T  48002927 aataggagagagagggtgcctataaaagcactcatctttataaataccgtattaattggtgtcacaatgagggtgtctatttaacatggtgctaaatagg 48002828  T
Q  114 ggaaggact 122  Q
    |||||||||    
T  48002827 ggaaggact 48002819  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 38944715 - 38944608
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtaga 113  Q
    |||| |||||| |||||| |||||||||||| ||||||||||||||||||||| |||  | | ||| |||| |||  |||||| ||||||| ||| |||     
T  38944715 aataggagagaaagggtgcctataaaagcactcatctttataagcaccatatttattgatgttacaatgggggtgtctatttaacatggtgctaaatagg 38944616  T
Q  114 ggaaggac 121  Q
    ||||||||    
T  38944615 ggaaggac 38944608  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 17999293 - 17999185
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtaga 113  Q
    |||| |||||||| |||| ||||||||||||||| || |||||||||| |||||||| || ||  | || | |||| |||||| ||||||| ||| |||     
T  17999293 aataggagagagatggtgcctataaaagcacccacctctataagcaccgtattaattggtgtcttaatgagggtgcctatttaacatggtgctaaatagg 17999194  T
Q  114 ggaaggact 122  Q
    |||||||||    
T  17999193 ggaaggact 17999185  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 20281312 - 20281386
Alignment:
Q  22 agagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttattta 96  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||| ||| || ||| |  |||||||| ||||||    
T  20281312 agagagggtgcctatacaagcacccatctttataagcaccctattcattggtgtcagaaagggagtgcctattta 20281386  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 3103039 - 3103090
Alignment:
Q  19 gagagagagggtgactataaaagcacccatctttataagcaccatattaatt 70  Q
    |||||||| |||| |||||||| |||| |||||||||| |||||||||||||    
T  3103039 gagagagaaggtgtctataaaaacaccaatctttataaacaccatattaatt 3103090  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 16716234 - 16716291
Alignment:
Q  132 ttatatatttatcgcgtaagt-attgaatcaaagttatctatcaaatgtagtgcatta 188  Q
    ||||||||| |||| |||| | ||||||||||||||||||| ||||||||||| ||||    
T  16716234 ttatatattaatcgtgtaaattattgaatcaaagttatctaccaaatgtagtgaatta 16716291  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 33604091 - 33604002
Alignment:
Q  33 ctataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtagaggaaggact 122  Q
    ||||||||||||  ||||||| || ||||||||||||| || ||||| | | ||||  |||||| |||| ||| || |||||||||||||    
T  33604091 ctataaaagcactaatctttacaaacaccatattaattggtgtcacaatagtagtgtctatttagcatgatgtcaaatagaggaaggact 33604002  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 48100288 - 48100223
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcaca 79  Q
    |||| |||||||| |||| ||||| ||||||||| ||| |||||||||||||| ||  ||||||||    
T  48100288 aataggagagagatggtgcctatacaagcacccaccttcataagcaccatattcatcggtatcaca 48100223  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 8448062 - 8447955
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtaga 113  Q
    |||| |||||||||| ||  ||||||||| | ||||| ||||||||| ||||||||| || |||||  |||| |||||||||| ||||||||||| ||      
T  8448062 aataggagagagaggatgcttataaaagctcacatctctataagcactatattaattggtgtcacaaaggga-tgcttatttagcatggtgttaaatacg 8447964  T
Q  114 ggaaggact 122  Q
    |||||||||    
T  8447963 ggaaggact 8447955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 8456866 - 8456759
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtaga 113  Q
    |||| |||||||||| ||  ||||||||| | ||||| ||||||||| ||||||||| || |||||  |||| |||||||||| ||||||||||| ||      
T  8456866 aataggagagagaggatgcttataaaagctcacatctctataagcactatattaattggtgtcacaaaggga-tgcttatttagcatggtgttaaatacg 8456768  T
Q  114 ggaaggact 122  Q
    |||||||||    
T  8456767 ggaaggact 8456759  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 793611 - 793719
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtaga 113  Q
    |||| |||||||||||||  |||| ||||||||| ||| |||||||||||||| ||| || |||||  ||| |||| ||||||  |||||| | | |||     
T  793611 aataggagagagagggtgcatatacaagcacccaccttcataagcaccatattcattggtgtcacaaagggggtgcatatttacaatggtgcttaatagg 793710  T
Q  114 ggaaggact 122  Q
    |||||||||    
T  793711 ggaaggact 793719  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 873091 - 873003
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatgg 102  Q
    |||| ||||||||||||| ||   |||||||||||||||||| ||||| |||||||| || ||||| |||| |||| |||||| |||||    
T  873091 aataggagagagagggtgccttataaagcacccatctttataggcaccgtattaattggtgtcacaatgggggtgcctatttaacatgg 873003  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 4088175 - 4088227
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatatt 66  Q
    |||| ||||||||||||| |||||||||||| |||||| ||||||||||||||    
T  4088175 aataggagagagagggtgcctataaaagcactcatcttcataagcaccatatt 4088227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 7601995 - 7602040
Alignment:
Q  21 gagagagggtgactataaaagcacccatctttataagcaccatatt 66  Q
    ||||||| ||| ||||||||||||||| |||||||| |||||||||    
T  7601995 gagagagagtgcctataaaagcacccacctttataaacaccatatt 7602040  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 38836524 - 38836597
Alignment:
Q  49 ctttataagcaccatattaattagtatcacagtgggagtgcttatttatcatggtgttaagtagaggaaggact 122  Q
    |||||||||||||||||| |||| | |||||  || |||| |||||||  |||||||| | |||||||||||||    
T  38836524 ctttataagcaccatatttattaatgtcacaaaggaagtgtttatttacaatggtgtttaatagaggaaggact 38836597  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 32813332 - 32813277
Alignment:
Q  14 aatatgagagagagggtgactataaaagcacccatctttataagcaccatattaatt 70  Q
    |||| |||||||||| || ||||| |||| ||||||||||||| |||||||||||||    
T  32813332 aataggagagagagg-tgcctatacaagcgcccatctttataaacaccatattaatt 32813277  T

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