View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15489_low_5 (Length: 519)

Name: NF15489_low_5
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15489_low_5
NF15489_low_5
[»] chr1 (6 HSPs)
chr1 (206-515)||(13878289-13878601)
chr1 (52-182)||(13878601-13878727)
chr1 (252-309)||(19071410-19071467)
chr1 (252-309)||(19119300-19119357)
chr1 (89-163)||(19071231-19071306)
chr1 (89-163)||(19119121-19119196)
[»] scaffold0068 (2 HSPs)
scaffold0068 (89-163)||(58771-58846)
scaffold0068 (252-309)||(58953-59015)
[»] chr6 (3 HSPs)
chr6 (98-163)||(21803094-21803160)
chr6 (291-340)||(34169207-34169256)
chr6 (252-309)||(21802924-21802987)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 206 - 515
Target Start/End: Complemental strand, 13878601 - 13878289
Alignment:
Q  206 tgtttctctgtgcagaagaa---agataatgagtggaattctaggggtagatttggaggcagagatattagttagattgcctgcaaagtcacttatgcgt 302  Q
    ||||||||||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13878601 tgtttctctgtgcagaagaagaaagataatgagtggaattctagggggagatttggaggcagagatattagttagattgcctgcaaagtcacttatgcgt 13878502  T
Q  303 tttaaatgtgttcaacgatcttggaacattcttttcaagaaccctaaatttgttattaggaacatgcatatccatatgtctaatgatgatgatgaccacc 402  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13878501 tttaaatgtgttcaaagatcttggaacattcttttcaagaaccctaaatttgttattaggaacatgcatatccatatgtctaatgatgatgatgaccacc 13878402  T
Q  403 atcgtttcgtgatcattaaacagtatacaaaagaaacatgccctaaaacccataaccacaatgacaggatctttgacaagcccattgaatcaacttgcct 502  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13878401 atcgtttcgttatcattaaacagtatacaaaagaaacatgccctaaaacccataaccacaatgacaggatctttgacaagcccattgaatcaacttgcct 13878302  T
Q  503 agaaacccaccta 515  Q
    |||||||||||||    
T  13878301 agaaacccaccta 13878289  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 13878727 - 13878601
Alignment:
Q  52 atatattgcttatttaaaactacaattcctgaaagtctgaaacgtcggtaccgagagataagggaaaaacgatccctttgaaaagatcaacaccgagaga 151  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13878727 atatattgcttatttaaaactacaattcctgaaagtctgaaaggtcggtaccgagagataagggaaaaacgatccctttgaaaagatcaacaccgagaga 13878628  T
Q  152 ggaggattaattaatttgtttctgaaataat 182  Q
    ||||||||    |||||||||||||||||||    
T  13878627 ggaggatt----aatttgtttctgaaataat 13878601  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 19071410 - 19071467
Alignment:
Q  252 gatttggaggcagagatattagttagattgcctgcaaagtcacttatgcgttttaaat 309  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19071410 gatttggaggcagagatattagttagatttcctgcaaagtcacttatgcgttttaaat 19071467  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 19119300 - 19119357
Alignment:
Q  252 gatttggaggcagagatattagttagattgcctgcaaagtcacttatgcgttttaaat 309  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19119300 gatttggaggcagagatattagttagatttcctgcaaagtcacttatgcgttttaaat 19119357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 19071231 - 19071306
Alignment:
Q  89 tgaaacgtcggtaccgagagataagggaaaaacgat-ccctttgaaaagatcaacaccgagagaggaggattaatt 163  Q
    ||||| || ||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||| |||| ||||||    
T  19071231 tgaaaggtaggtaccgagagataagggaaaaatgatcccctttgaaaagatcaccaccaagagacgagggttaatt 19071306  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 19119121 - 19119196
Alignment:
Q  89 tgaaacgtcggtaccgagagataagggaaaaacgat-ccctttgaaaagatcaacaccgagagaggaggattaatt 163  Q
    ||||| || ||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||| |||| ||||||    
T  19119121 tgaaaggtaggtaccgagagataagggaaaaatgatcccctttgaaaagatcaccaccaagagacgagggttaatt 19119196  T

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Target: scaffold0068 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 58771 - 58846
Alignment:
Q  89 tgaaacgtcggtaccgagagataagggaaaaacgat-ccctttgaaaagatcaacaccgagagaggaggattaatt 163  Q
    ||||| || ||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||| |||| ||||||    
T  58771 tgaaaggtaggtaccgagagataagggaaaaatgatcccctttgaaaagatcaccaccaagagacgagggttaatt 58846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 58953 - 59015
Alignment:
Q  252 gatttggaggcagagatattagttagattgcctgc-----aaagtcacttatgcgttttaaat 309  Q
    |||||||||| ||||||||||||||||||||||||     |||||||||||||||||||||||    
T  58953 gatttggaggaagagatattagttagattgcctgcaagtgaaagtcacttatgcgttttaaat 59015  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 21803160 - 21803094
Alignment:
Q  98 ggtaccgagagataagggaaaaacgat-ccctttgaaaagatcaacaccgagagaggaggattaatt 163  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||| ||||| |||| ||||||    
T  21803160 ggtaccgagagataagggaaaaacaatcccctttgaaaagatcaccaccaagagacgagggttaatt 21803094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 34169207 - 34169256
Alignment:
Q  291 tcacttatgcgttttaaatgtgttcaacgatcttggaacattcttttcaa 340  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||| |||||    
T  34169207 tcactaatgcgtttcaaatgcgttcaacgatcttggaacattctattcaa 34169256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 21802987 - 21802924
Alignment:
Q  252 gatttggaggcagagatattagttagattgcct------gcaaagtcacttatgcgttttaaat 309  Q
    |||||||||| ||||||||||||| ||||||||      |||||||||||||||||||||||||    
T  21802987 gatttggaggaagagatattagttggattgcctgcaagtgcaaagtcacttatgcgttttaaat 21802924  T

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