View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15489_low_8 (Length: 432)
Name: NF15489_low_8
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15489_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 21432589 - 21432309
Alignment:
| Q |
1 |
ataggatttatagtgatatttgcaacacctgagatcaaaatcgatacaatagggttaaatttgcaagtacccaatagactctcccaagaatgatacaata |
100 |
Q |
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| T |
21432589 |
ataggatttatagtgatatttgcaacacctgagagcaaaatcgatacaatagggttaaatttgcaagttcccaata--ctctcccaagaatgatacaata |
21432492 |
T |
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| Q |
101 |
gtgctaatttctagagtattccaattctgacttacaacctcttctcttcactatttagttagttacagcttcaagctcatcaactattaactacatttcc |
200 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21432491 |
gtgctaagttctagagtgttccaattctgacttacaacctcttctattcactatttagttagttacagcttcaagctcatcaactattaactacatttcc |
21432392 |
T |
|
| Q |
201 |
ctcgatccagagctaatctcttaagcaattcagcaccaaatccttatttctaactct--cagttcaaatactccatctccctt |
281 |
Q |
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| T |
21432391 |
ctcgatccagagctaatctcttaagcaattcagcaccaaatccttatttctaactctcacagttcaaatactccatctccctt |
21432309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 324 - 422
Target Start/End: Complemental strand, 21432295 - 21432197
Alignment:
| Q |
324 |
tctaggtgttcttccgagtttctgcaaaatatgaggatatcataaaaaatagtagaacaaacttgctgaaataaggtcgtatcttacgacatcattcat |
422 |
Q |
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| T |
21432295 |
tctaggtgttcttccgagtttctgcaaaatatgaggatatcataaaaaatagtagaacaaacttgctgaaataaggtcgtatcttacgacatcattcat |
21432197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 27100069 - 27100147
Alignment:
| Q |
260 |
gttcaaatactccatctcccttactgcaaattcacacaacaataacaacaccttgctccagtggtctaggtgttcttccg |
339 |
Q |
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| T |
27100069 |
gttcaaatactccatctccattgctgcaaattcacacgacaata-caacaccttgctccagtggtctaggtgttcttccg |
27100147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 27099841 - 27099958
Alignment:
| Q |
1 |
ataggatttatagtgatatttgcaacacctgagatcaaaatcgatacaatagggttaaatttgcaagtacccaatagactctcccaagaatgatacaata |
100 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||| |||||||||| || |||| ||| ||||||||||||||||||||| |
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| T |
27099841 |
ataggatttatagtgatatttgcaagacctgagagcaaaatcaatacaataggttt-------------ccca--agaatctcccaagaatgatacaata |
27099925 |
T |
|
| Q |
101 |
gtgctaatttctagagtattccaattctgactt |
133 |
Q |
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| T |
27099926 |
gggctaaattctagagtgtcccaattctgactt |
27099958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 27099973 - 27100029
Alignment:
| Q |
179 |
atcaactattaactacatttccctcgatccagagctaatctcttaagcaattcagcacc |
237 |
Q |
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|||||||||||| |||||||||||| | ||||||||||||||||| ||||||||||| |
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| T |
27099973 |
atcaactattaattacatttccctccct--agagctaatctcttaagtaattcagcacc |
27100029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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