View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15489_low_9 (Length: 407)

Name: NF15489_low_9
Description: NF15489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15489_low_9
NF15489_low_9
[»] chr2 (15 HSPs)
chr2 (62-330)||(28946529-28946800)
chr2 (189-259)||(9331203-9331273)
chr2 (288-330)||(9331315-9331357)
chr2 (273-330)||(43494896-43494953)
chr2 (200-257)||(13151163-13151220)
chr2 (197-250)||(16218334-16218387)
chr2 (273-330)||(39432391-39432448)
chr2 (209-257)||(14151820-14151868)
chr2 (343-374)||(28946477-28946508)
chr2 (216-250)||(38902193-38902227)
chr2 (273-330)||(1987528-1987587)
chr2 (273-330)||(4296280-4296339)
chr2 (273-330)||(8855383-8855442)
chr2 (273-330)||(31184915-31184974)
chr2 (275-330)||(36855036-36855092)
[»] chr5 (13 HSPs)
chr5 (62-251)||(27595046-27595240)
chr5 (212-257)||(36610017-36610062)
chr5 (288-330)||(14279219-14279261)
chr5 (219-257)||(14279289-14279327)
chr5 (273-330)||(15972970-15973030)
chr5 (288-330)||(21368638-21368680)
chr5 (288-330)||(34529059-34529101)
chr5 (273-326)||(41263819-41263873)
chr5 (288-333)||(7827494-7827539)
chr5 (273-330)||(8680948-8681005)
chr5 (219-256)||(34528981-34529018)
chr5 (273-330)||(25653208-25653267)
chr5 (273-330)||(41152504-41152563)
[»] chr3 (28 HSPs)
chr3 (273-375)||(21228456-21228563)
chr3 (200-257)||(30862358-30862415)
chr3 (211-259)||(21229170-21229218)
chr3 (191-259)||(21228585-21228649)
chr3 (273-330)||(21229234-21229292)
chr3 (365-403)||(51974535-51974573)
chr3 (288-333)||(15493424-15493469)
chr3 (273-329)||(51974630-51974689)
chr3 (342-374)||(21229311-21229343)
chr3 (273-330)||(28410778-28410837)
chr3 (273-330)||(35852869-35852928)
chr3 (273-330)||(43022987-43023046)
chr3 (209-257)||(49406892-49406940)
chr3 (211-251)||(53722966-53723006)
chr3 (273-330)||(26549872-26549930)
chr3 (208-250)||(35423561-35423603)
chr3 (288-330)||(46572603-46572645)
chr3 (219-257)||(47700505-47700543)
chr3 (200-257)||(15493328-15493385)
chr3 (219-256)||(46572525-46572562)
chr3 (200-249)||(49356838-49356887)
chr3 (212-257)||(51974710-51974755)
chr3 (273-330)||(5844649-5844708)
chr3 (273-330)||(17469800-17469859)
chr3 (273-330)||(25450111-25450170)
chr3 (273-330)||(47147657-47147716)
chr3 (273-330)||(49710131-49710190)
chr3 (213-257)||(50175729-50175772)
[»] chr1 (14 HSPs)
chr1 (288-374)||(38212695-38212781)
chr1 (97-165)||(38212994-38213064)
chr1 (273-330)||(8464951-8465009)
chr1 (189-259)||(44334744-44334814)
chr1 (273-333)||(37646067-37646128)
chr1 (215-259)||(38212810-38212854)
chr1 (211-259)||(40500857-40500905)
chr1 (219-257)||(20584385-20584423)
chr1 (288-333)||(44450911-44450956)
chr1 (288-333)||(44651456-44651501)
chr1 (273-330)||(27629969-27630028)
chr1 (273-330)||(31471572-31471631)
chr1 (273-330)||(37419853-37419912)
chr1 (273-326)||(39149531-39149586)
[»] chr7 (10 HSPs)
chr7 (62-128)||(28147741-28147806)
chr7 (273-330)||(33379669-33379726)
chr7 (211-259)||(1939497-1939545)
chr7 (211-257)||(43201497-43201543)
chr7 (273-330)||(25217921-25217978)
chr7 (273-330)||(43570771-43570830)
chr7 (200-259)||(32749407-32749466)
chr7 (273-330)||(37888764-37888822)
chr7 (274-322)||(1939556-1939604)
chr7 (288-328)||(25038238-25038278)
[»] chr4 (17 HSPs)
chr4 (189-259)||(42383747-42383817)
chr4 (189-250)||(2112785-2112846)
chr4 (189-250)||(33527170-33527231)
chr4 (273-330)||(39532809-39532866)
chr4 (189-250)||(51392698-51392759)
chr4 (189-244)||(34564537-34564592)
chr4 (273-368)||(54356552-54356647)
chr4 (288-330)||(55591-55633)
chr4 (273-328)||(39048680-39048737)
chr4 (275-330)||(55408196-55408253)
chr4 (273-330)||(31336161-31336218)
chr4 (273-330)||(2211973-2212032)
chr4 (288-328)||(33527082-33527122)
chr4 (211-251)||(39532746-39532786)
chr4 (273-330)||(40596391-40596450)
chr4 (273-330)||(46914167-46914226)
chr4 (213-257)||(54356480-54356523)
[»] chr8 (16 HSPs)
chr8 (273-330)||(5736406-5736463)
chr8 (192-259)||(8607812-8607879)
chr8 (211-257)||(17494136-17494182)
chr8 (211-259)||(39810613-39810661)
chr8 (191-250)||(38584441-38584500)
chr8 (189-247)||(7990934-7990992)
chr8 (276-330)||(12272093-12272147)
chr8 (273-328)||(17494206-17494263)
chr8 (273-330)||(26631783-26631841)
chr8 (273-330)||(26748589-26748647)
chr8 (273-330)||(30289392-30289450)
chr8 (200-249)||(5736493-5736542)
chr8 (200-249)||(34954882-34954931)
chr8 (273-330)||(8449663-8449722)
chr8 (275-330)||(8607903-8607959)
chr8 (273-330)||(30470448-30470507)
[»] scaffold0007 (1 HSPs)
scaffold0007 (191-330)||(165941-166078)
[»] chr6 (7 HSPs)
chr6 (273-330)||(7541327-7541384)
chr6 (208-257)||(22628197-22628246)
chr6 (273-330)||(6725300-6725359)
chr6 (211-259)||(7541410-7541458)
chr6 (273-330)||(198211-198269)
chr6 (361-399)||(7540514-7540552)
chr6 (273-330)||(34328784-34328843)
[»] scaffold1183 (1 HSPs)
scaffold1183 (273-330)||(29-88)
[»] scaffold0758 (1 HSPs)
scaffold0758 (273-330)||(6348-6406)


Alignment Details
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 62 - 330
Target Start/End: Complemental strand, 28946800 - 28946529
Alignment:
Q  62 tcattttcaacacttaaaaagcatgcaatggtgtattgaaagttaaggaaaaatgaggtggaagaga--gatgttgaaagaactcagcatgttgaaatct 159  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||  ||||||||||||||||| |||||||||||||    
T  28946800 tcattttcaacacttaaaaagcatgcaattgtgtgttgaaagttgaggaaaaatgacgtggaagagatagatgttgaaagaactcaacatgttgaaatct 28946701  T
Q  160 gcaaaggcggggtaagagtaggccacgtcgcgcttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    ||||||| |||| |||||||||||||||  |||||| |||||| |||||||  ||||| ||||||||||||||| || |||||||||||| || ||||||    
T  28946700 gcaaaggtggggcaagagtaggccacgtgacgcttgctggttgtctgactaagtttatttcatcttaattatttgaattcaattatttcactgtaaatga 28946601  T
Q  260 gnnnnnnnnnnnnaccaaaattcatgaa---ttttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
                 |||||||||||| ||   ||||||||||||||||||||| |||||||||||||||| ||||    
T  28946600 --tttttttttttaccaaaattcataaaattttttttgtctataaatagaatattgtttcatttgattttgaca 28946529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 9331203 - 9331273
Alignment:
Q  189 gcgcttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9331203 gcgcttgctggttggctggctagatttatctcatcttaattatttgaactcaattatttcattgcaaatga 9331273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 9331315 - 9331357
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9331315 ttttttgtctataaatagaatcttgtttcatttgatttggaca 9331357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 43494896 - 43494953
Alignment:
Q  273 accaaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| ||||||||||||  |||| |||||||||||||||||    
T  43494896 accaaaattcatgatttttttttctataaatagagacttggttcatttgatttggaca 43494953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 13151163 - 13151220
Alignment:
Q  200 ttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    |||||||  ||||||| | |||||||||| |||| |||||||||||||||||||||||    
T  13151163 ttggctgcttagatttttatcatcttaataatttgaactcaattatttcattgcaaat 13151220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 16218334 - 16218387
Alignment:
Q  197 tggttggctgactagatttatctcatcttaattatttcaactcaattatttcat 250  Q
    |||||||| | || ||||||||||||||||||||||| ||||||||||| ||||    
T  16218334 tggttggccgtctggatttatctcatcttaattatttgaactcaattatctcat 16218387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 39432391 - 39432448
Alignment:
Q  273 accaaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| ||||||||||||  ||||  ||||||||||||||||    
T  39432391 accaaaattcatgatttttttctctataaatagagacttggatcatttgatttggaca 39432448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 14151820 - 14151868
Alignment:
Q  209 tagatttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    ||||||| | |||||||||| |||| |||||||||||||||||||||||    
T  14151820 tagatttttatcatcttaataatttgaactcaattatttcattgcaaat 14151868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 374
Target Start/End: Complemental strand, 28946508 - 28946477
Alignment:
Q  343 aagcttttcactatcttaatattattatcttt 374  Q
    ||||||||||||||||||||||||||||||||    
T  28946508 aagcttttcactatcttaatattattatcttt 28946477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 38902227 - 38902193
Alignment:
Q  216 atctcatcttaattatttcaactcaattatttcat 250  Q
    |||||||||||||||||| ||||||||||||||||    
T  38902227 atctcatcttaattatttaaactcaattatttcat 38902193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 1987587 - 1987528
Alignment:
Q  273 accaaaattcatgaattttttg--tctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| ||||||   ||||||||||||  |||| |||||||||||||||||    
T  1987587 accaaaattcatgattttttttcctctataaatagagacttggttcatttgatttggaca 1987528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 4296280 - 4296339
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  4296280 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 4296339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 8855442 - 8855383
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  8855442 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 8855383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 31184915 - 31184974
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  31184915 accaaaattcatgatttttttctctctataaatagagacttggttcatttgatttggaca 31184974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 36855036 - 36855092
Alignment:
Q  275 caaaattcatgaattttttg-tctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||| ||||||  ||||||||||||  |||| |||||||||||||||||    
T  36855036 caaaattcatgattttttttctctataaatagagacttggttcatttgatttggaca 36855092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 27595046 - 27595240
Alignment:
Q  62 tcattttcaacacttaaaaagcatgcaatggtgtattgaaagttaaggaaaaatgaggtggaagaga--gatgttgaaagaactcagcatgttgaaatct 159  Q
    |||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||  ||||||||||||||||| ||||||||||| |    
T  27595046 tcattttcaaca-ttaaaaagcatgcaatggtgtgttgaaagttgaggaaaaatgaggtggatgagatagatgttgaaagaactcaacatgttgaaattt 27595144  T
Q  160 gcaaaggcggggtaagagtaggccacgtcgcgcttgttggttggctgactag----atttatctcatcttaattatttcaactcaattatttcatt 251  Q
    ||||||| | || ||||| ||||||||| ||||||| |||||||||| || |    || | |||||||||||||||||||||||||||||||||||    
T  27595145 gcaaaggtgaggcaagagcaggccacgtggcgcttgctggttggctggctggctgaatgtttctcatcttaattatttcaactcaattatttcatt 27595240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 36610062 - 36610017
Alignment:
Q  212 atttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  36610062 atttatctcatcttaattatttgaactcaattatttcattgcaaat 36610017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 14279261 - 14279219
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||||||||  |||| |||||||||||||||||    
T  14279261 ttttttgtctataaatagagacttggttcatttgatttggaca 14279219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 14279327 - 14279289
Alignment:
Q  219 tcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  14279327 tcatcttaataatttgaactcaattatttcattgcaaat 14279289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 15973030 - 15972970
Alignment:
Q  273 accaaaattcatga---attttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    ||||||||||||||    |||||||||||||||||||  |||| |||||||||||||||||    
T  15973030 accaaaattcatgattttttttttgtctataaatagagacttgattcatttgatttggaca 15972970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 21368680 - 21368638
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||| ||||||||||||| |||| |||||||||||||||||    
T  21368680 ttttttctctataaatagaaacttggttcatttgatttggaca 21368638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 34529059 - 34529101
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||||||||  |||| |||||||||||||||||    
T  34529059 ttttttgtctataaatagagacttggttcatttgatttggaca 34529101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 41263873 - 41263819
Alignment:
Q  273 accaaaattcatgaattttttg-tctataaatagaatcttgtttcatttgatttg 326  Q
    |||||||||||||| ||||||  ||||||||||||  ||||||||||||||||||    
T  41263873 accaaaattcatgattttttttctctataaatagagacttgtttcatttgatttg 41263819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 7827539 - 7827494
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggacatag 333  Q
    |||||| ||||||||||||  |||| ||||||||||||||||||||    
T  7827539 ttttttctctataaatagagacttggttcatttgatttggacatag 7827494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 8680948 - 8681005
Alignment:
Q  273 accaaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    ||||||||| |||| ||||||||||||||||||   | || |||||||||||||||||    
T  8680948 accaaaatttatgatttttttgtctataaatagggacatggttcatttgatttggaca 8681005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 34528981 - 34529018
Alignment:
Q  219 tcatcttaattatttcaactcaattatttcattgcaaa 256  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  34528981 tcatcttaataatttgaactcaattatttcattgcaaa 34529018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 25653267 - 25653208
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  25653267 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 25653208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 41152504 - 41152563
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  41152504 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 41152563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 375
Target Start/End: Complemental strand, 21228563 - 21228456
Alignment:
Q  273 accaaaattcatgaatttttt-gtctataaatagaatcttgtttcatttgatttggacatag----nnnnnnnngaagcttttcactatcttaatattat 367  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||||    
T  21228563 accaaaattcatgattttttttgtctataaatagaatcttgtttcattttatttggacataggaaaaaaaaaacgaagcttttcactatcttaatattat 21228464  T
Q  368 tatctttt 375  Q
    ||| ||||    
T  21228463 tatttttt 21228456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 30862358 - 30862415
Alignment:
Q  200 ttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    ||||||| || |||||||||||| |||||||||| |||||||||||||||||||||||    
T  30862358 ttggctgtctggatttatctcattttaattatttgaactcaattatttcattgcaaat 30862415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 21229170 - 21229218
Alignment:
Q  211 gatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  21229170 gatttatctcatcttaattatttggactcaattatttcattgcaaatga 21229218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 21228649 - 21228585
Alignment:
Q  191 gcttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    ||||||||||||||||    ||||||||| |||||||||||||  ||||||||||||||||| ||||||    
T  21228649 gcttgttggttggctg----gatttatcttatcttaattatttggactcaattatttcattgaaaatga 21228585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 21229234 - 21229292
Alignment:
Q  273 accaaaattcatgaatttt-ttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||||  ||||||||    
T  21229234 accaaaattcatgattttttttgtctataattagaatcttgtttcattttctttggaca 21229292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 51974573 - 51974535
Alignment:
Q  365 tattatcttttcttttgaagttttaatattcttttcagt 403  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  51974573 tattaacttttcttttgaagttttaatattcttttcagt 51974535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 15493424 - 15493469
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggacatag 333  Q
    |||||||||||||||||||  |||| ||||||||||||||||||||    
T  15493424 ttttttgtctataaatagagacttggttcatttgatttggacatag 15493469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 51974689 - 51974630
Alignment:
Q  273 accaaaattcatga---attttttgtctataaatagaatcttgtttcatttgatttggac 329  Q
    ||||||||||||||    |||||||||||||||||||| |||| ||||||||||||||||    
T  51974689 accaaaattcatgattttttttttgtctataaatagaaacttggttcatttgatttggac 51974630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 374
Target Start/End: Original strand, 21229311 - 21229343
Alignment:
Q  342 gaagcttttcactatcttaatattattatcttt 374  Q
    |||||||||||||||||||||||||||||||||    
T  21229311 gaagcttttcactatcttaatattattatcttt 21229343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 28410837 - 28410778
Alignment:
Q  273 accaaaattcatgaattt--tttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||  ||||||||||||||||  |||| |||||||||||||||||    
T  28410837 accaaaattcatgattttattttgtctataaatagagacttggttcatttgatttggaca 28410778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 35852869 - 35852928
Alignment:
Q  273 accaaaattcatgaattt--tttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||  ||||||||||||||||  |||| |||||||||||||||||    
T  35852869 accaaaattcatgattttattttgtctataaatagagacttggttcatttgatttggaca 35852928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 43023046 - 43022987
Alignment:
Q  273 accaaaattcatgaattt--tttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||  ||||||||||||||||  |||| |||||||||||||||||    
T  43023046 accaaaattcatgattttattttgtctataaatagagacttggttcatttgatttggaca 43022987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 49406892 - 49406940
Alignment:
Q  209 tagatttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    ||||||| | |||||||||| |||| |||||||||||||||||||||||    
T  49406892 tagatttttatcatcttaataatttgaactcaattatttcattgcaaat 49406940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 53723006 - 53722966
Alignment:
Q  211 gatttatctcatcttaattatttcaactcaattatttcatt 251  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  53723006 gatttatctcatcttaataatttgaactcaattatttcatt 53722966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 26549872 - 26549930
Alignment:
Q  273 accaaaattcatgaatttt-ttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||| ||||||||||||| |  |||| |||||||||||||||||    
T  26549872 accaaaattcatgattttttttgtctataaataaagacttggttcatttgatttggaca 26549930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 35423561 - 35423603
Alignment:
Q  208 ctagatttatctcatcttaattatttcaactcaattatttcat 250  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||    
T  35423561 ctagattaatctcatcttaatcatttaaactcaattatttcat 35423603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 46572603 - 46572645
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||||||||  |||| |||||||||||||||||    
T  46572603 ttttttgtctataaatagagacttggttcatttgatttggaca 46572645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 47700505 - 47700543
Alignment:
Q  219 tcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  47700505 tcatcttaataatttaaactcaattatttcattgcaaat 47700543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 15493328 - 15493385
Alignment:
Q  200 ttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    ||||||| ||| |||| | |||| ||||| |||| |||||||||||||||||||||||    
T  15493328 ttggctgtctaaatttttatcattttaataatttgaactcaattatttcattgcaaat 15493385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 46572525 - 46572562
Alignment:
Q  219 tcatcttaattatttcaactcaattatttcattgcaaa 256  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  46572525 tcatcttaataatttgaactcaattatttcattgcaaa 46572562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 49356838 - 49356887
Alignment:
Q  200 ttggctgactagatttatctcatcttaattatttcaactcaattatttca 249  Q
    ||||||| || ||||| | |||||||||| ||||||||||||||||||||    
T  49356838 ttggctgtctggatttttatcatcttaataatttcaactcaattatttca 49356887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 51974755 - 51974710
Alignment:
Q  212 atttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    |||||| |||| ||||| |||| |||||||||||||||||||||||    
T  51974755 atttatttcattttaataatttgaactcaattatttcattgcaaat 51974710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 5844649 - 5844708
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  5844649 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 5844708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 17469859 - 17469800
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  17469859 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 17469800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 25450111 - 25450170
Alignment:
Q  273 accaaaattcatgaattttttg--tctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| ||||||   ||||||||||||  |||| |||||||||||||||||    
T  25450111 accaaaattcatgattttttttcctctataaatagagacttggttcatttgatttggaca 25450170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 47147716 - 47147657
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  47147716 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 47147657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 49710131 - 49710190
Alignment:
Q  273 accaaaattcatgaattt--tttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||  ||||||||||||||||  |||| |||||||||||| ||||    
T  49710131 accaaaattcatgattttattttgtctataaatagagacttggttcatttgattttgaca 49710190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 50175729 - 50175772
Alignment:
Q  213 tttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||    
T  50175729 tttatctcatcttaatt-tttaaactcaattatttcattgaaaat 50175772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 374
Target Start/End: Complemental strand, 38212781 - 38212695
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggacatagnnnnnnnngaagcttttcactatcttaatattattatcttt 374  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||        |||  ||||||||||||||||||||||||||||    
T  38212781 ttttttgtctataaatagaatcttgtttcatttgattaggacacagaaaaaaacgaaatttttcactatcttaatattattatcttt 38212695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 38213064 - 38212994
Alignment:
Q  97 ttgaaagttaaggaaaaatgaggtggaagagaga--tgttgaaagaactcagcatgttgaaatctgcaaag 165  Q
    ||||||||| ||||||||||| ||||||||||||  |||||||||||||||  ||||||||||||||||||    
T  38213064 ttgaaagttgaggaaaaatgaagtggaagagagagatgttgaaagaactcaaaatgttgaaatctgcaaag 38212994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 8465009 - 8464951
Alignment:
Q  273 accaaaattcatgaattttttg-tctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||||||||||  ||||||||||||  |||| |||||||||||||||||    
T  8465009 accaaaattcatgaatttttttctctataaatagagacttggttcatttgatttggaca 8464951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 44334814 - 44334744
Alignment:
Q  189 gcgcttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    |||||||||| ||||||  || |||| ||||| |||||||||||| ||||||||||||||||  |||||||    
T  44334814 gcgcttgttgattggcttgctggattaatctcttcttaattatttaaactcaattatttcatgacaaatga 44334744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 37646067 - 37646128
Alignment:
Q  273 accaaaattcatgaattttttg-tctataaatagaatcttgtttcatttgatttggacatag 333  Q
    |||||||||||||| ||||||  ||||||||||||  |||| ||||||||||||||||||||    
T  37646067 accaaaattcatgattttttttctctataaatagagacttggttcatttgatttggacatag 37646128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 38212854 - 38212810
Alignment:
Q  215 tatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    ||||||||||||||||||| ||||||||||||||| | |||||||    
T  38212854 tatctcatcttaattatttgaactcaattatttcaatccaaatga 38212810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 40500905 - 40500857
Alignment:
Q  211 gatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    |||| |||||||||||||||||| ||||||||||||||||  |||||||    
T  40500905 gattaatctcatcttaattatttaaactcaattatttcatgacaaatga 40500857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 20584385 - 20584423
Alignment:
Q  219 tcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  20584385 tcatcttaataatttcaactcaattattccattgcaaat 20584423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 44450911 - 44450956
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggacatag 333  Q
    |||||| ||||||||||||  |||| ||||||||||||||||||||    
T  44450911 ttttttctctataaatagagacttggttcatttgatttggacatag 44450956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 44651501 - 44651456
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggacatag 333  Q
    |||||| ||||||||||||  |||| ||||||||||||||||||||    
T  44651501 ttttttctctataaatagagacttggttcatttgatttggacatag 44651456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 27629969 - 27630028
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  27629969 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 27630028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 31471631 - 31471572
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  31471631 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 31471572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 37419853 - 37419912
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  37419853 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 37419912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 39149586 - 39149531
Alignment:
Q  273 accaaaattcatga--attttttgtctataaatagaatcttgtttcatttgatttg 326  Q
    ||||||||||||||  ||||||||||||||||||||  |||  |||||||||||||    
T  39149586 accaaaattcatgattattttttgtctataaatagagacttagttcatttgatttg 39149531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 28147806 - 28147741
Alignment:
Q  62 tcattttcaacacttaaaaagcatgcaatggtgtattgaaagttaaggaaaaatgaggtggaagaga 128  Q
    ||||||| |||||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||    
T  28147806 tcatttttaacacttaaaaa-catgcaattgtgtcttgaaagttgaggaaaaatgaggtggaagaga 28147741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 33379726 - 33379669
Alignment:
Q  273 accaaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| ||||||||||||  |||| |||||||||||||||||    
T  33379726 accaaaattcatgatttttttctctataaatagagacttggttcatttgatttggaca 33379669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 1939497 - 1939545
Alignment:
Q  211 gatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  1939497 gatttatctcattttaattatttgaactgaattatttcattgcaaatga 1939545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 43201497 - 43201543
Alignment:
Q  211 gatttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||||    
T  43201497 gatttttctcatcttaataatttgaactcaattatttcattgcaaat 43201543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 25217921 - 25217978
Alignment:
Q  273 accaaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| ||||||||||||   ||| |||||||||||||||||    
T  25217921 accaaaattcatgatttttttctctataaatagagatttggttcatttgatttggaca 25217978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 43570771 - 43570830
Alignment:
Q  273 accaaaattcatgaattt--tttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||  ||||||||||||||||  |||| |||||||||||||||||    
T  43570771 accaaaattcatgattttattttgtctataaatagagacttggttcatttgatttggaca 43570830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 32749466 - 32749407
Alignment:
Q  200 ttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    |||||||||| ||||| | || ||||||| ||||  ||||||||||||||||||||||||    
T  32749466 ttggctgactggatttttatcttcttaataatttggactcaattatttcattgcaaatga 32749407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 37888822 - 37888764
Alignment:
Q  273 accaaaattcatgaattttttg-tctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| ||||||  ||||||||||||  |||| |||||||||||||||||    
T  37888822 accaaaattcatgattttttttctctataaatagagacttggttcatttgatttggaca 37888764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 1939556 - 1939604
Alignment:
Q  274 ccaaaattcatgaattttttgtctataaatagaatcttgtttcatttga 322  Q
    ||||||||||||| |||||| ||||||||||||  |||| |||||||||    
T  1939556 ccaaaattcatgatttttttttctataaatagagacttggttcatttga 1939604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 25038238 - 25038278
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttgga 328  Q
    |||||||||||||||||||  |||| |||||||||||||||    
T  25038238 ttttttgtctataaatagagacttggttcatttgatttgga 25038278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 42383747 - 42383817
Alignment:
Q  189 gcgcttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    |||||||||| ||||||  || |||| |||||||||||||||||| ||||||||||||||||  |||||||    
T  42383747 gcgcttgttgattggcttgctggattaatctcatcttaattatttaaactcaattatttcatgacaaatga 42383817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 2112846 - 2112785
Alignment:
Q  189 gcgcttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcat 250  Q
    |||||||||| ||||||  || |||| |||||||||||||||||| ||||||||||||||||    
T  2112846 gcgcttgttgattggcttgctggattaatctcatcttaattatttaaactcaattatttcat 2112785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 33527231 - 33527170
Alignment:
Q  189 gcgcttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcat 250  Q
    |||||||||| ||||||  || |||| |||||||||||||||||| ||||| ||||||||||    
T  33527231 gcgcttgttgattggcttgctggattaatctcatcttaattatttaaactcgattatttcat 33527170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 39532809 - 39532866
Alignment:
Q  273 accaaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||| ||||||| |||||||||||||||||||   ||| |||||||||||||||||    
T  39532809 accaaagttcatgatttttttgtctataaatagagatttggttcatttgatttggaca 39532866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 51392759 - 51392698
Alignment:
Q  189 gcgcttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcat 250  Q
    |||||||||| ||||||  ||  ||| |||||||||||||||||| ||||||||||||||||    
T  51392759 gcgcttgttgattggcttgctgaattaatctcatcttaattatttaaactcaattatttcat 51392698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 34564592 - 34564537
Alignment:
Q  189 gcgcttgttggttggctgactagatttatctcatcttaattatttcaactcaatta 244  Q
    |||||||||| ||||||  || |||| |||||||||||||||||| ||||||||||    
T  34564592 gcgcttgttgattggcttgctggattaatctcatcttaattatttaaactcaatta 34564537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 54356552 - 54356647
Alignment:
Q  273 accaaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggacatagnnnnnnnngaagcttttcactatcttaatattatt 368  Q
    |||||||||||||| ||||||| |||||||| ||   ||| ||||||||||||||||| ||         ||| ||||||||||||||||||||||    
T  54356552 accaaaattcatgatttttttggctataaattgagatttgattcatttgatttggacacagaaaaaaactaagtttttcactatcttaatattatt 54356647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 55591 - 55633
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||||||||  |||| |||||||||||||||||    
T  55591 ttttttgtctataaatagagacttggttcatttgatttggaca 55633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 39048680 - 39048737
Alignment:
Q  273 accaaaattcatgaatttt--ttgtctataaatagaatcttgtttcatttgatttgga 328  Q
    |||||||||||||| ||||  |||||||||||||||  |||| |||||||||||||||    
T  39048680 accaaaattcatgatttttttttgtctataaatagagacttggttcatttgatttgga 39048737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 55408196 - 55408253
Alignment:
Q  275 caaaattcatgaattt--tttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||| |||  ||||||||||||||||  |||| |||||||||||||||||    
T  55408196 caaaattcatgattttattttgtctataaatagagacttggttcatttgatttggaca 55408253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 31336161 - 31336218
Alignment:
Q  273 accaaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||| ||| |||||| ||||||||||||  ||||  ||||||||||||||||    
T  31336161 accaaaattcgtgatttttttctctataaatagagacttggatcatttgatttggaca 31336218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 2211973 - 2212032
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  2211973 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 2212032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 33527122 - 33527082
Alignment:
Q  288 ttttttgtctataaatagaatcttgtttcatttgatttgga 328  Q
    |||||||||||||||||||  |||| |||||||||||||||    
T  33527122 ttttttgtctataaatagagacttggttcatttgatttgga 33527082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 39532746 - 39532786
Alignment:
Q  211 gatttatctcatcttaattatttcaactcaattatttcatt 251  Q
    ||||||||||| |||||| |||| |||||||||||||||||    
T  39532746 gatttatctcaacttaataatttgaactcaattatttcatt 39532786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 40596391 - 40596450
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  40596391 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 40596450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 46914167 - 46914226
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  46914167 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 46914226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 54356480 - 54356523
Alignment:
Q  213 tttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||    
T  54356480 tttatctcatcttaatt-tttaaactcaattatttcattgaaaat 54356523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 5736463 - 5736406
Alignment:
Q  273 accaaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| ||||||||||||  |||| |||||||||||||||||    
T  5736463 accaaaattcatgatttttttctctataaatagagacttggttcatttgatttggaca 5736406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 8607812 - 8607879
Alignment:
Q  192 cttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    ||||||| ||||||  || |||| |||||||||||||||||| ||||||||||||||||  |||||||    
T  8607812 cttgttgattggcttgctggattaatctcatcttaattatttaaactcaattatttcatgacaaatga 8607879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 17494136 - 17494182
Alignment:
Q  211 gatttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    ||||| |||||||||||| |||| |||||||||||||||||||||||    
T  17494136 gatttttctcatcttaataatttgaactcaattatttcattgcaaat 17494182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 39810613 - 39810661
Alignment:
Q  211 gatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    |||| |||||||||||||||||| ||||||||||||||||  |||||||    
T  39810613 gattaatctcatcttaattatttaaactcaattatttcatgacaaatga 39810661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 38584441 - 38584500
Alignment:
Q  191 gcttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcat 250  Q
    |||||||| ||||||  ||  ||| |||||||||||||||||| ||||||||||||||||    
T  38584441 gcttgttgattggcttgctgaattaatctcatcttaattatttaaactcaattatttcat 38584500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 7990992 - 7990934
Alignment:
Q  189 gcgcttgttggttggctgactagatttatctcatcttaattatttcaactcaattattt 247  Q
    |||||||||| ||||||   | |||| |||||||||||||||||| |||||||||||||    
T  7990992 gcgcttgttgattggcttgttggattaatctcatcttaattatttaaactcaattattt 7990934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 12272093 - 12272147
Alignment:
Q  276 aaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    ||||||||||| |||||| ||||||||||||  ||||  ||||||||||||||||    
T  12272093 aaaattcatgatttttttctctataaatagagacttggatcatttgatttggaca 12272147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 17494206 - 17494263
Alignment:
Q  273 accaaaattcatgaatttt--ttgtctataaatagaatcttgtttcatttgatttgga 328  Q
    |||||||||||||| ||||  ||||||||| |||||| |||| |||||||||||||||    
T  17494206 accaaaattcatgatttttttttgtctatacatagaaacttggttcatttgatttgga 17494263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 26631783 - 26631841
Alignment:
Q  273 accaaaattcatgaattttttg-tctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| ||||||  ||||||||||||  |||| |||||||||||||||||    
T  26631783 accaaaattcatgattttttttctctataaatagagacttggttcatttgatttggaca 26631841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 26748589 - 26748647
Alignment:
Q  273 accaaaattcatgaattttttg-tctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| ||||||  ||||||||||||  |||| |||||||||||||||||    
T  26748589 accaaaattcatgattttttttctctataaatagagacttggttcatttgatttggaca 26748647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 30289392 - 30289450
Alignment:
Q  273 accaaaattcatgaatttt-ttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||| ||||||||||||||   |||| |||||||||||||||||    
T  30289392 accaaaattcatgattttttttgtctataaatagtgacttggttcatttgatttggaca 30289450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 5736542 - 5736493
Alignment:
Q  200 ttggctgactagatttatctcatcttaattatttcaactcaattatttca 249  Q
    ||||||| || ||||| | |||||||||| ||||||||||||||||||||    
T  5736542 ttggctgtctggatttttatcatcttaataatttcaactcaattatttca 5736493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 34954882 - 34954931
Alignment:
Q  200 ttggctgactagatttatctcatcttaattatttcaactcaattatttca 249  Q
    ||||||| || ||||| | |||||||||| ||||||||||||||||||||    
T  34954882 ttggctgtctggatttttatcatcttaataatttcaactcaattatttca 34954931  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 8449663 - 8449722
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  8449663 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 8449722  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 8607903 - 8607959
Alignment:
Q  275 caaaattcatgaatttt-ttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||| |||| |||||||||||||||   ||| |||||||||||||||||    
T  8607903 caaaattcatgattttttttgtctataaatagatatttggttcatttgatttggaca 8607959  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 30470448 - 30470507
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  30470448 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 30470507  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 330
Target Start/End: Original strand, 165941 - 166078
Alignment:
Q  191 gcttgttggttggctgactagatttatctcatcttaattatttcaactcaattatttcattgcaaatgagnnnnnnnnnnnnaccaaaattcatgaattt 290  Q
    ||||||||||||| || || | |||||| |||||||||||||| | |||||||||||||||||||||||             ||||||||| || | |||    
T  165941 gcttgttggttggttggctggttttatc-catcttaattatttgatctcaattatttcattgcaaatga--tttttttttataccaaaatttataatttt 166037  T
Q  291 ttt-gtctataaatagaatcttgtttcatttgatttggaca 330  Q
    ||| | |||||||||||||||| ||||||||||||||||||    
T  166038 ttttgcctataaatagaatcttatttcatttgatttggaca 166078  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 7541384 - 7541327
Alignment:
Q  273 accaaaattcatgaattttttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| ||||||||||||   ||| |||||||||||||||||    
T  7541384 accaaaattcatgatttttttttctataaatagagatttggttcatttgatttggaca 7541327  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 22628246 - 22628197
Alignment:
Q  208 ctagatttatctcatcttaattatttcaactcaattatttcattgcaaat 257  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||| |||||    
T  22628246 ctagatttatctcattttatttatttgaactcaattatttcatttcaaat 22628197  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 6725300 - 6725359
Alignment:
Q  273 accaaaattcatgaattt--tttgtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||  ||||||||||||||||  |||| |||||||||||||||||    
T  6725300 accaaaattcatgattttattttgtctataaatagagacttggttcatttgatttggaca 6725359  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 7541458 - 7541410
Alignment:
Q  211 gatttatctcatcttaattatttcaactcaattatttcattgcaaatga 259  Q
    ||||||||||||||||||||||| || |||||||| | |||||||||||    
T  7541458 gatttatctcatcttaattatttgaattcaattatgtaattgcaaatga 7541410  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 198269 - 198211
Alignment:
Q  273 accaaaattcatgaattttttg-tctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| ||||||  ||||||||||||  |||| |||||||||||||||||    
T  198269 accaaaattcatgattttttttctctataaatagagacttggttcatttgatttggaca 198211  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 399
Target Start/End: Complemental strand, 7540552 - 7540514
Alignment:
Q  361 atattattatcttttcttttgaagttttaatattctttt 399  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  7540552 atattattagcttttcttttgaagttttaatcttctttt 7540514  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 34328843 - 34328784
Alignment:
Q  273 accaaaattcatgaattttttgtct--ataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| |||||| |||  |||||||||  |||| |||||||||||||||||    
T  34328843 accaaaattcatgatttttttttctctataaatagagacttggttcatttgatttggaca 34328784  T

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Target: scaffold1183 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1183
Description:

Target: scaffold1183; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 88 - 29
Alignment:
Q  273 accaaaattcatgaatttttt--gtctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| ||||||  |||||||||||||  |||| |||||||||||||||||    
T  88 accaaaattcatgatttttttttgtctataaatagatacttggttcatttgatttggaca 29  T

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Target: scaffold0758 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 6348 - 6406
Alignment:
Q  273 accaaaattcatgaattttttg-tctataaatagaatcttgtttcatttgatttggaca 330  Q
    |||||||||||||| ||||||  ||||||||||||  |||| |||||||||||||||||    
T  6348 accaaaattcatgattttttttctctataaatagagacttggttcatttgatttggaca 6406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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