View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_high_13 (Length: 264)
Name: NF1548_high_13
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 34142405 - 34142645
Alignment:
| Q |
13 |
cttagcgtcatgctatggctcaccctctaattaaggggttatattaagaaaatcataaaattggaagacaacaaagacaacatttattaggtcaaaagtc |
112 |
Q |
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| T |
34142405 |
cttagcgtcatgctatggctcaccctctaattaaggggttatattaagaaaatcataaaattggaagacaacaaagacaacatttattaggtcaaaagtc |
34142504 |
T |
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| Q |
113 |
cataaaactataatgttttggtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcacaag-acccactgttgatctgttttc |
211 |
Q |
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| T |
34142505 |
cataaaactataatg-tttggtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcacaagaacccactgttgatctgttttc |
34142603 |
T |
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| Q |
212 |
cgcttcacttcaagtcctccaacctcatcttgggcaagaata |
253 |
Q |
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| T |
34142604 |
cgcttcacttcaagtcctccaacctcatcttgggcaagaata |
34142645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 34131029 - 34131150
Alignment:
| Q |
133 |
gtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcacaaga-cccactgttgatctgttttccgcttcacttcaagtcctcc |
231 |
Q |
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| T |
34131029 |
gtacctgaatgatatcaccaacattgataatgtaagcatctggggtaggtttcacaagaacccattgttggtctgatttacgcttcacttcaagtcctcc |
34131128 |
T |
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| Q |
232 |
aacctcatcttgggcaagaata |
253 |
Q |
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| T |
34131129 |
aacctcatcttgggcaagaata |
34131150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 34136720 - 34136841
Alignment:
| Q |
133 |
gtacctgaatgacatcaccaacattaataatataagcatctggtgtgggtttcacaaga-cccactgttgatctgttttccgcttcacttcaagtcctcc |
231 |
Q |
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| T |
34136720 |
gtacctggataatatcacaaacgttgataatgtaagcatctgaggtaggtttcacaagaacccactcttgtgatgctttgtgcttcacttcaagaccccc |
34136819 |
T |
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| Q |
232 |
aacctcatcttgggcaagaata |
253 |
Q |
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||| |||||||||||||||||| |
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| T |
34136820 |
aacatcatcttgggcaagaata |
34136841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 34139943 - 34139999
Alignment:
| Q |
197 |
tgttgatctgttttccgcttcacttcaagtcctccaacctcatcttgggcaagaata |
253 |
Q |
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| T |
34139943 |
tgttgatctgttttacgcttcacttcaagaccttcaacctcatttagggtaagaata |
34139999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 34125968 - 34126008
Alignment:
| Q |
213 |
gcttcacttcaagtcctccaacctcatcttgggcaagaata |
253 |
Q |
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| T |
34125968 |
gcttcacttcaagaccagcaacctcatcttgggcaagaata |
34126008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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