View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_high_2 (Length: 465)
Name: NF1548_high_2
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 212 - 448
Target Start/End: Complemental strand, 12804103 - 12803867
Alignment:
| Q |
212 |
ttccgcgaaattctcattcatttagccttagagagagccgttgtaatgcgaaatatggcgcataatttcggacaaaatagttggatcacccagaagaaaa |
311 |
Q |
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| T |
12804103 |
ttccgcgaaattctcattcatttagccttagagagagccgttgtaatgcgaaatatggcgcataatttcggacaaaatagttggatcacccagaagaaaa |
12804004 |
T |
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| Q |
312 |
aatcagtgtcacgtgattgtttaaaactcttcgacaacacagttttccatctcaaccgtacatttttagacctccacaagaaaaaatcatgttcatcgtt |
411 |
Q |
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| T |
12804003 |
aatcagtgtcacgtgattgtttaaaactcttcgacaacacagttttccatctcaaccgtacatttttagacctccacaagaaaaaatcatgttcatcatt |
12803904 |
T |
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| Q |
412 |
cgatgcacaaacatggctaagcacggcctatacaaac |
448 |
Q |
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| T |
12803903 |
cgatgcacaaacatggctaagcacggcctatacaaac |
12803867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 12804304 - 12804172
Alignment:
| Q |
11 |
atcatcatgggaaagatattgttaacactattattgttatcatcaattttctcaatagccacttcatcaaaaagaagatcaagatcttccaacaacaaca |
110 |
Q |
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| T |
12804304 |
atcatcatgggaaagatattgttaacactattattgttatcatcaattttctcaatagccacttcatcaaaaagaagatcaagatcttccaacaacaaca |
12804205 |
T |
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| Q |
111 |
tagattggtggtgtaaccaaaccccacacccag |
143 |
Q |
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| T |
12804204 |
tagattggtggtgtaaccaaaccccacacccag |
12804172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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