View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_high_24 (Length: 236)
Name: NF1548_high_24
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 758453 - 758233
Alignment:
| Q |
1 |
atcattacaatttgtgatatcattaccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagtgagaaacacaacatgatgata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758453 |
atcattacaatttgtgatatcattaccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagtgagaaacacaacatgatgata |
758354 |
T |
|
| Q |
101 |
aatagaacagaatggaagaggacaaatactaaagaacaatagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcacc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758353 |
aatagaacagaatggaagaggacaaatactaaagaacagtagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcacc |
758254 |
T |
|
| Q |
201 |
attgttgtctcaagttaatta |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
758253 |
attgttgtctcaagttaatta |
758233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36988918 - 36989138
Alignment:
| Q |
1 |
atcattacaatttgtgatatcattaccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagtgagaaacacaacatgatgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36988918 |
atcattacaatttgtgatatcattaccaataacatactacaacacatccccgtaatttaatttgttaagaaaccaaagtgagaaacacaacatgatgata |
36989017 |
T |
|
| Q |
101 |
aatagaacagaatggaagaggacaaatactaaagaacaatagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcacc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989018 |
aatagaacagaatggaagaggacaaatactaaagaacagtagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcacc |
36989117 |
T |
|
| Q |
201 |
attgttgtctcaagttaatta |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
36989118 |
attgttgtctcaagttaatta |
36989138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37014357 - 37014577
Alignment:
| Q |
1 |
atcattacaatttgtgatatcattaccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagtgagaaacacaacatgatgata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37014357 |
atcattacaatttgtgatatcattaccaataacatactacaacacatccccgtaatttaatttgttaagaaaccaaagtgagaaacacaacatgatgata |
37014456 |
T |
|
| Q |
101 |
aatagaacagaatggaagaggacaaatactaaagaacaatagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37014457 |
aatagaacagaatggaagaggacaaatactaaagaacagtagcaaacaaggacctcctgtgctgtggatttttatgatcaaattcaaagccataatcacc |
37014556 |
T |
|
| Q |
201 |
attgttgtctcaagttaatta |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
37014557 |
attgttgtctcaagttaatta |
37014577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 36443667 - 36443639
Alignment:
| Q |
4 |
attacaatttgtgatatcattaccaataa |
32 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
36443667 |
attacaatttgtgatatcattaccaataa |
36443639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 19180896 - 19180852
Alignment:
| Q |
177 |
atcaaattcaaagccataatcaccattgttgtctcaagttaatta |
221 |
Q |
| |
|
||||||||||||| | ||| ||| ||||||||||||||||||||| |
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|
| T |
19180896 |
atcaaattcaaagtcttaagcacaattgttgtctcaagttaatta |
19180852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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