View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1548_high_28 (Length: 224)
Name: NF1548_high_28
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 8233944 - 8234135
Alignment:
| Q |
11 |
agattatactgagtgaaagcgggcaaaagatgaatgacatgccgtattgtacggagcgaataatgaacatacttccatttttacaacaatcacttttagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8233944 |
agattatactgagtgaaagcgggcaaaagatgaatgacataccgcattgtacggagcgaataatgaacatacttccatttttacaacaatcacttttagt |
8234043 |
T |
|
| Q |
111 |
aaagttctataaagttgatcattattttaaagnnnnnnngatattctttaacctttcacatggtctcaaacttggattcatttgcatgtgcttcac |
206 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8234044 |
aaagttctataaagttgatca----ttgaagttttctttgatattctttaacctttcacatggtctcaaacttggattcatttgcatgtgcttcac |
8234135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 8244364 - 8244498
Alignment:
| Q |
66 |
gcgaataatgaacatacttccatttttacaacaatcacttttagtaaagttctataaagttga-tcattattttaaag-nnnnnnngatattctttaacc |
163 |
Q |
| |
|
||||||||||| ||||||||| |||||| || |||| |||||||||||||||||| ||||||| || || |||||||| ||| |||||| ||| |
|
|
| T |
8244364 |
gcgaataatgagcatacttccgtttttaaaataatctcttttagtaaagttctatcaagttgattcttttttttaaagatttctttgattttcttttacc |
8244463 |
T |
|
| Q |
164 |
tttcacatggtctcaaacttggattcatttgcatgt |
199 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8244464 |
-ttcacatggtttcaaagttggattcatttgcatgt |
8244498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 8237153 - 8237206
Alignment:
| Q |
45 |
tgacatgccgtattgtacggagcgaataatgaacatacttccatttttacaaca |
98 |
Q |
| |
|
||||| |||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8237153 |
tgacacgccgtattgtgcggagcgaataacgaacatacttccatttttacaaca |
8237206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 8243809 - 8243872
Alignment:
| Q |
66 |
gcgaataatgaacatacttccatttttacaacaatcacttttagtaaagttctataaagttgat |
129 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
8243809 |
gcgaataacgagcatacttccatttttaaaacaatctctttcagtaaagttctatcaagttgat |
8243872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 8248315 - 8248418
Alignment:
| Q |
35 |
aaaagatgaatgacatgccgtattgtacggagcgaataatgaacatacttccatttttacaacaatcacttttagtaaagttctataaagttgatcatta |
134 |
Q |
| |
|
|||||||||||||||||||| || | || | ||||||| || ||||||||||||||| |||||| | |||| | ||||||| |||||||| ||||| |
|
|
| T |
8248315 |
aaaagatgaatgacatgccgcataatgcgaaacgaataacgagcatacttccatttttccaacaacctctttcggcaaagttccttaaagttggtcattg |
8248414 |
T |
|
| Q |
135 |
tttt |
138 |
Q |
| |
|
|||| |
|
|
| T |
8248415 |
tttt |
8248418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 8243210 - 8243272
Alignment:
| Q |
67 |
cgaataatgaacatacttccatttttacaacaatcacttttagtaaagttctataaagttgat |
129 |
Q |
| |
|
||||||| || ||||||| |||||| | ||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
8243210 |
cgaataacgagcatactttcattttcaaaacaatctctttttgtaaagttctatcaagttgat |
8243272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 8447386 - 8447478
Alignment:
| Q |
41 |
tgaatgacatgccgtattgtacggagcgaataatgaacatacttccatttttacaacaatcacttttagtaaagttctataaagttgatcatt |
133 |
Q |
| |
|
||||| |||||||| ||| || ||| ||||||| ||||||| |||||||||||||| | || ||| ||||||||||||| ||||||||| |
|
|
| T |
8447386 |
tgaataacatgccgcattatatggaacgaataacatgcatactttcatttttacaacaacctctcttaataaagttctataacattgatcatt |
8447478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University