View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1548_low_1 (Length: 727)

Name: NF1548_low_1
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1548_low_1
NF1548_low_1
[»] chr7 (3 HSPs)
chr7 (15-718)||(33541804-33542507)
chr7 (400-482)||(35778948-35779030)
chr7 (202-273)||(46950242-46950313)
[»] chr2 (3 HSPs)
chr2 (190-338)||(35549379-35549533)
chr2 (190-311)||(14392072-14392193)
chr2 (177-310)||(38411690-38411821)
[»] chr1 (6 HSPs)
chr1 (203-311)||(11672104-11672212)
chr1 (203-329)||(3446965-3447090)
chr1 (203-322)||(11670423-11670544)
chr1 (201-338)||(10163210-10163351)
chr1 (204-311)||(35238568-35238674)
chr1 (176-305)||(36814484-36814613)
[»] chr5 (5 HSPs)
chr5 (177-311)||(33623007-33623141)
chr5 (177-252)||(13857794-13857870)
chr5 (177-252)||(33625294-33625369)
chr5 (401-452)||(10932718-10932769)
chr5 (177-250)||(36070344-36070417)
[»] chr4 (2 HSPs)
chr4 (184-261)||(2569428-2569506)
chr4 (211-301)||(3070900-3070989)
[»] chr6 (4 HSPs)
chr6 (176-226)||(1515767-1515818)
chr6 (176-226)||(1517858-1517909)
chr6 (176-226)||(1519945-1519996)
chr6 (211-330)||(12337864-12337983)
[»] chr8 (4 HSPs)
chr8 (190-338)||(21240542-21240691)
chr8 (176-252)||(1027815-1027892)
chr8 (399-448)||(5393452-5393501)
chr8 (176-232)||(38063748-38063805)


Alignment Details
Target: chr7 (Bit Score: 651; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 15 - 718
Target Start/End: Original strand, 33541804 - 33542507
Alignment:
Q  15 agttactactgtttatagaaagaacaggagaggccataaaagcaacataaagtaagatatgaaatgagggaccaagccaacaagtggtactagtttgaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541804 agttactactgtttatagaaagaacaggagaggccataaaagcaacataaagtaagatatgaaatgagggaccaagccaacaagtggtactagtttgaga 33541903  T
Q  115 aagcataggcttaccagtcctgaaagtgaaattttacattattaagtgcatgtgtttgattgcagggccggtccgatgtatttttagtctaaagcgaaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541904 aagcataggcttaccagtcctgaaagtgaaattttacattattaagtgcatgtgtttgattgcagggccggtccgatgtatttttagtctaaagcgaaat 33542003  T
Q  215 ttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatttcattaattctctcaattgaaagtaattttatttgatgcgt 314  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33542004 ttaaatagagatattttaagtgtgtttagagataataacataaaaatgaagaaaaaatttcactaattctctcaattgaaagtaattttatttgatgcgt 33542103  T
Q  315 gtcagacattaaatatgagtatttgattaatcaccttatgagatctagcctctttgacnnnnnnnttgtctctgaaaatattttcattttcaaattacaa 414  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  33542104 gtcagacattaaatatgagtatttgattaatcactttatgagatctagcctctttgacaaaaaaattgtctctgaaaatattttcattttcaaattacaa 33542203  T
Q  415 gatatttttagtgtttcttttttaaataaacccctaatcaatattactaaatgttttggaatatgaaatggtatttaactatataattcaaagggtttaa 514  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33542204 gatatatttaatgtttcttttttaaataaacccctaatcaatattactaaatgttttggaatatgaaatagtatttaactatataattcaaagggtttaa 33542303  T
Q  515 gaacattcctttataaaatagatacattaaatacattagcaactttttgtaataagagcagaaattgcaataggagctgatatttatgaatggctaaagt 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33542304 gaacattcctttataaaatagatacattaaatacattagcaactttttgtaataagagcagaaattgcaataggagctgatatttatgaatggctaaagt 33542403  T
Q  615 aaagcttactttagcaaattttccacctcaaaattatgacaaaactacaaaacttgatccttaaaccaaatcttctcaagttaaacttgaaaggttaaga 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33542404 aaagcttactttagcaaattttccacctcaaaattatgacaaaactacaaaacttgatccttaaaccaaatcttctcaagttaaacttgaaaggttaaga 33542503  T
Q  715 ataa 718  Q
    ||||    
T  33542504 ataa 33542507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 400 - 482
Target Start/End: Complemental strand, 35779030 - 35778948
Alignment:
Q  400 attttcaaattacaagatatttttagtgtttcttttttaaataaacccctaatcaatattactaaatgttttggaatatgaaa 482  Q
    ||||||||||||| | |||| |||| ||||||||||| ||||||||||||||| ||||  || |||||||||||||| |||||    
T  35779030 attttcaaattactaaatatatttattgtttctttttcaaataaacccctaattaataccaccaaatgttttggaatgtgaaa 35778948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 46950313 - 46950242
Alignment:
Q  202 tctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatt 273  Q
    |||||| | |||||||||||||||  |||||||| ||| || ||||||||||| |||||  |||||||||||    
T  46950313 tctaaatcaaaatttaaatagagatcttttaagtatgtatagagagaataacacaaaaaataagaaaaaatt 46950242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 338
Target Start/End: Original strand, 35549379 - 35549533
Alignment:
Q  190 atgtattttta-gtctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatga-agaaaaaatttcattaattctctc 287  Q
    ||||||||||| | ||||||| |||||||||||||||| ||||||||| ||||| ||||||||| | |||| | | | |||| | ||||| | ||| |||    
T  35549379 atgtatttttacgcctaaagcaaaatttaaatagagactttttaagtgcgtttagagagaataagacaaaactaacaaaaaagaattcataagttccctc 35549478  T
Q  288 aattgaaagtaattttatttgatgcgtgtcagac----attaaatatgagtattt 338  Q
    ||| |||||||||| ||| ||||  |||||||||    |||||||||||||||||    
T  35549479 aatcgaaagtaattctatatgatttgtgtcagacactgattaaatatgagtattt 35549533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 311
Target Start/End: Complemental strand, 14392193 - 14392072
Alignment:
Q  190 atgtatttttag-tctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatttcattaattctctca 288  Q
    |||||||||||| ||||| | |||||||||||||||   ||||||||| ||||  ||||||||| | |||| | || |||||| ||||| | ||| ||||    
T  14392193 atgtatttttaggtctaatgagaaatttaaatagaggtcttttaagtgcgtttggagagaataaaacaaaatt-aacaaaaaaattcataagttccctca 14392095  T
Q  289 attgaaagtaattttatttgatg 311  Q
    ||||||||||||| ||| |||||    
T  14392094 attgaaagtaattctatatgatg 14392072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 310
Target Start/End: Original strand, 38411690 - 38411821
Alignment:
Q  177 cagggccggtccgatgtatttttag-tctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatttc 275  Q
    |||||||| ||| |||||||||||| |||||| | |||||||||||||  | ||||| ||| || || ||||||||| | |||| | ||||||||| |||    
T  38411690 cagggccgatccaatgtatttttaggtctaaaacaaaatttaaataga--ccttttatgtgcgtgtagagagaataagacaaaatt-aagaaaaaaattc 38411786  T
Q  276 attaattctctcaattgaaagtaattttatttgat 310  Q
    || | |||  ||||| |||||||||||||| ||||    
T  38411787 ataagttccttcaatcgaaagtaattttatatgat 38411821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 11672104 - 11672212
Alignment:
Q  203 ctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatttcattaattctctcaattgaaagtaattt 302  Q
    |||||||||||||||||||||||| |||||||||  |||| ||||||||| | |||| | || |||||||| ||| | |||  ||||| |||| ||||||    
T  11672104 ctaaagcgaaatttaaatagagaccttttaagtgcatttagagagaataagacaaaatttaaaaaaaaattccataagttccttcaatcgaaaataattt 11672203  T
Q  303 tatttgatg 311  Q
    ||| |||||    
T  11672204 tatatgatg 11672212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 329
Target Start/End: Original strand, 3446965 - 3447090
Alignment:
Q  203 ctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatttcattaattctctcaattgaaagtaattt 302  Q
    |||||||||||||| ||||||  | ||| ||||||||||||||||||||| |  ||||| || |||||| | ||| | || | || ||  ||||||||||    
T  3446965 ctaaagcgaaatttgaatagaagcctttcaagtgtgtttaaagagaataaga-caaaattaaaaaaaaaatccataagttttttcgatgaaaagtaattt 3447063  T
Q  303 tatttgatgcgtgtcagacattaaata 329  Q
    ||| ||||| |||||||||| ||||||    
T  3447064 tatatgatgtgtgtcagacactaaata 3447090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 11670423 - 11670544
Alignment:
Q  203 ctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaa-at-gaagaaaaaatttcattaattctctcaattgaaagtaat 300  Q
    |||||||||||||||||||||| | ||||||||| ||||  ||| ||||| | |||| || ||| |||||||| ||| | ||| |||||| |||| ||||    
T  11670423 ctaaagcgaaatttaaatagaggccttttaagtgcgtttggagataataagacaaaatatagaaaaaaaaattccataagttccctcaatcgaaaataat 11670522  T
Q  301 tttatttgatgcgtgtcagaca 322  Q
    ||||| ||||| ||||| ||||    
T  11670523 tttatatgatgtgtgtctgaca 11670544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 338
Target Start/End: Complemental strand, 10163351 - 10163210
Alignment:
Q  201 gtctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatttcattaattctctcaattgaaagtaat 300  Q
    ||||||||||||||||||||||||   |||||| || ||| | | ||||||| | |||| | |  |||||||| ||| | ||| |||||| |||||||||    
T  10163351 gtctaaagcgaaatttaaatagaggtcttttaaatgcgttgagatagaataagacaaaattaagaaaaaaattccataagttccctcaatcgaaagtaat 10163252  T
Q  301 tttatttgatgcgtgtcagac----attaaatatgagtattt 338  Q
    | ||| ||||| || ||||||    |||||||||||||||||    
T  10163251 tctatatgatgtgtatcagacactaattaaatatgagtattt 10163210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 35238568 - 35238674
Alignment:
Q  204 taaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatttcattaattctctcaattgaaagtaatttt 303  Q
    |||||||||||||||||| |   |||||||||| ||||| ||||||||| || ||||| || |||||| ||||| | ||| ||||||  ||||||||| |    
T  35238568 taaagcgaaatttaaatatatgtattttaagtgcgtttagagagaataagat-aaaattaacaaaaaaattcataagttccctcaatcaaaagtaattat 35238666  T
Q  304 atttgatg 311  Q
    || |||||    
T  35238667 atatgatg 35238674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 305
Target Start/End: Complemental strand, 36814613 - 36814484
Alignment:
Q  176 gcagggccggtccgatgtatttttagtc-taaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaattt 274  Q
    |||||||||| |  |||||||||||| | ||||  |||| |||||||||||||||||||||||| | | ||||||||| | ||| || |  ||||||||     
T  36814613 gcagggccggactaatgtatttttaggcctaaaatgaaacttaaatagagacattttaagtgtg-tcagagagaataagacaaacataagaaaaaaattc 36814515  T
Q  275 cattaattctctcaattgaaagtaattttat 305  Q
    ||| | ||| |||||| |||| |||||||||    
T  36814514 cataagttccctcaatcgaaaataattttat 36814484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 311
Target Start/End: Original strand, 33623007 - 33623141
Alignment:
Q  177 cagggccggtccgatgtatttttagtctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatttca 276  Q
    ||||| ||| || |||||||||  ||||||||||||||||||||| |||  ||||||||| ||||| ||||||||| | |||| | |  |||||| ||||    
T  33623007 cagggtcggcccaatgtattttatgtctaaagcgaaatttaaataaagattttttaagtgcgtttagagagaataagacaaaattaacaaaaaaaattca 33623106  T
Q  277 ttaattctctcaattgaaagtaattttatttgatg 311  Q
    | ||||  ||||||  ||||||||| ||| |||||    
T  33623107 taaatttcctcaatcaaaagtaattatatatgatg 33623141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 13857794 - 13857870
Alignment:
Q  177 cagggccggtccgatgtatttttag-tctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataa 252  Q
    ||||||||| | ||||| ||| ||| |||||||||||||||||| |||| |||||||| |||||||| |||||||||    
T  13857794 cagggccggcctgatgtgtttctaggtctaaagcgaaatttaaacagaggcattttaaatgtgtttagagagaataa 13857870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 33625294 - 33625369
Alignment:
Q  177 cagggccggtccgatgtatttttagtctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataa 252  Q
    ||||| ||| || |||||||||  ||||||||||||||||||||| |||  ||||||||| ||||| |||||||||    
T  33625294 cagggtcggcccaatgtattttatgtctaaagcgaaatttaaataaagattttttaagtgcgtttagagagaataa 33625369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 452
Target Start/End: Original strand, 10932718 - 10932769
Alignment:
Q  401 ttttcaaattacaagatatttttagtgtttcttttttaaataaacccctaat 452  Q
    |||||||||||| ||| || |||| ||||||||||||||||||| |||||||    
T  10932718 ttttcaaattactagacatatttattgtttcttttttaaataaatccctaat 10932769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 36070344 - 36070417
Alignment:
Q  177 cagggccggtccgatgtatttttagtc-taaagcgaaatttaaatagagacattttaagtgtgtttaaagagaat 250  Q
    |||||| ||||| |||||||||||| | ||| ||||||||||||||||| | ||||||||| ||||| |||||||    
T  36070344 cagggctggtccaatgtatttttaggcctaatgcgaaatttaaatagaggc-ttttaagtgcgtttagagagaat 36070417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 2569428 - 2569506
Alignment:
Q  184 ggtccgatgtatttttagtctaa-agcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaat 261  Q
    ||||| |||||||||||| | || | |||||||||||||| ||||||||||  ||||||||||||||||||| ||||||    
T  2569428 ggtccaatgtatttttagaccaacaacgaaatttaaatagcgacattttaaacgtgtttaaagagaataacacaaaaat 2569506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 211 - 301
Target Start/End: Original strand, 3070900 - 3070989
Alignment:
Q  211 aaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatttcattaattctctcaattgaaagtaatt 301  Q
    ||||||||||| ||  |||||||||| ||||| ||||||||| || ||||| ||||||||| ||||| | ||| ||||||  |||||||||    
T  3070900 aaatttaaatataggtattttaagtgcgtttagagagaataaaat-aaaattaagaaaaaaattcataagttccctcaatgaaaagtaatt 3070989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 1515767 - 1515818
Alignment:
Q  176 gcagggccggtccgatgtattttta-gtctaaagcgaaatttaaatagagac 226  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  1515767 gcagggccggtccaatgtatttttaagtctaaagcgaaatttagatagagac 1515818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 1517858 - 1517909
Alignment:
Q  176 gcagggccggtccgatgtattttta-gtctaaagcgaaatttaaatagagac 226  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  1517858 gcagggccggtccaatgtatttttaagtctaaagcgaaatttagatagagac 1517909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 1519945 - 1519996
Alignment:
Q  176 gcagggccggtccgatgtattttta-gtctaaagcgaaatttaaatagagac 226  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  1519945 gcagggccggtccaatgtatttttaagtctaaagcgaaatttagatagagac 1519996  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 330
Target Start/End: Complemental strand, 12337983 - 12337864
Alignment:
Q  211 aaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaa-tttcattaattctctcaattgaaagtaattttatttga 309  Q
    ||||||||||| || | |||||||||||| || ||| ||||||| |||||| ||||||||| |||||| | ||  | | ||||||||||||| |||||||    
T  12337983 aaatttaaataaaggctttttaagtgtgtatagagaaaataaca-aaaaattaagaaaaaaatttcataattttccgcgattgaaagtaattatatttga 12337885  T
Q  310 tgcgtgtcagacattaaatat 330  Q
    | ||| | ||||| |||||||    
T  12337884 ttcgtattagacactaaatat 12337864  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 338
Target Start/End: Complemental strand, 21240691 - 21240542
Alignment:
Q  190 atgtatttttagtc-taaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataacataaaaatgaagaaaaaatttc-attaattctctc 287  Q
    |||||||||||| | |||| | ||||||||||||||   |||||||| |||||| ||||||||| | |||| | |||||| || ||| || | ||  |||    
T  21240691 atgtatttttaggcctaaaacaaaatttaaatagaggttttttaagtttgtttagagagaataagacaaaatt-aagaaagaaattctatcagtttcctc 21240593  T
Q  288 aattgaaagtaattttatttgatgcgtgtcagacattaaatatgagtattt 338  Q
    ||| |||||||||| ||| ||||| |||| ||||| |||||||||||||||    
T  21240592 aatcgaaagtaattctatatgatgtgtgtgagacactaaatatgagtattt 21240542  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 1027815 - 1027892
Alignment:
Q  176 gcagggccggtccgatgtatttttag-tctaaagcgaaatttaaatagagacattttaagtgtgtttaaagagaataa 252  Q
    ||||||||||| | |||||| ||||| |||||||| ||||||||||||||   || ||| || |||||||||||||||    
T  1027815 gcagggccggtacaatgtatatttaggtctaaagcaaaatttaaatagaggtcttctaaatgcgtttaaagagaataa 1027892  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 448
Target Start/End: Original strand, 5393452 - 5393501
Alignment:
Q  399 cattttcaaattacaagatatttttagtgtttcttttttaaataaacccc 448  Q
    ||||||||||||||||||||  |||| ||||||||||  |||||||||||    
T  5393452 cattttcaaattacaagatacatttattgtttcttttccaaataaacccc 5393501  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 38063748 - 38063805
Alignment:
Q  176 gcagggccggtccgatgtatttttag-tctaaagcgaaatttaaatagagacatttta 232  Q
    |||||||||| |  |||||| ||||| ||||||||||||||||||||||| |||||||    
T  38063748 gcagggccggcctaatgtatatttaggtctaaagcgaaatttaaatagaggcatttta 38063805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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