View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1548_low_10 (Length: 388)
Name: NF1548_low_10
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 27312723 - 27313077
Alignment:
| Q |
19 |
tttacattgagattacccgataaagttcgaaagcagatgatgatgaacacgacgacgcttaagcgtgcaaaaagttgtgtaagttttacgagaatgagca |
118 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27312723 |
tttacactgaggttacccgataaagttcgaaagcagatgatgttgaacacgacgacacttaagcgtgcaaaaagttgtgtaagttttacgagaatgagca |
27312822 |
T |
|
| Q |
119 |
gtggcacgtgcggatataggtcaagaagttttggttgtggaagtgggattggtcaagtgcagtacgaaaggtttggaagtgaagaagaagagaattattt |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
27312823 |
gtggcacgttcggatataggtcaagaagttttggttgtggaagtgggattggtcaagtgcagtacgaaaggtttggaagtgaggaagaagagaattactt |
27312922 |
T |
|
| Q |
219 |
agggtttcttaggaatagttggaataacaaatcggtgagaaaatctcctatgaagtgtttgggagttgatatcgacaacgatgatgacgaacgatcctct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27312923 |
agggtttcttaggaatagttggaataacaaatcggtgagaaaatctcctatgaagtgtttgggagttgatatcgacaacgatgatgacgaacgatcctct |
27313022 |
T |
|
| Q |
319 |
gatcttttgtttcctgtgtagttaattgcaagagtggatcattgtcacatgttga |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27313023 |
gatcttttgtttcctgtgtagttaattgcaagagtggatgattgtcacatgttga |
27313077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University