View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_13 (Length: 361)
Name: NF1548_low_13
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 5369714 - 5370050
Alignment:
| Q |
19 |
gcctttccttttttcttgatgttgtacttgtatagtaaaataaaaatgatctacttgtttgagtgtaatctaaatttgtgggggagataatacacgttct |
118 |
Q |
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| T |
5369714 |
gcctttccttttttcttgatgttgtacttgtatcgtaaaataaaaatgatctacttgtttgagtgtaatctaaatttgtgggggagataatacaagttct |
5369813 |
T |
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| Q |
119 |
taatagtgttactttttcagttgaaaccggaagcaagatcacacaagttttctctaaatgacacggtggatgatacaaaagcaagaggaattatatatgc |
218 |
Q |
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| T |
5369814 |
taatagtgttactttttcagttgaaaccggaagcaagatcacacaagttttctctaaatgacacggtggatgatacaaaagcaagaggaattatatatgc |
5369913 |
T |
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| Q |
219 |
aagttttctctagaaattcctttaagtgtggaggacttataacaagaagatcactttttccaagagaaacctttgtactatctagaaaacatgtttaaga |
318 |
Q |
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| T |
5369914 |
aagttttctctagaaattccttgaagtgtggaggacttataac---aagatcactttttccaagagaaacctttgtactatctagaaaacatgttaaaga |
5370010 |
T |
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| Q |
319 |
ttatttattttcccgcattctagtatacctattaattcat |
358 |
Q |
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| T |
5370011 |
ttatttattttcccgcattctagtatacctattaattcat |
5370050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 346
Target Start/End: Original strand, 5357022 - 5357333
Alignment:
| Q |
23 |
ttccttttttcttgatgttgtacttgtatagtaaaataaaaatgatctacttgtttgagtgtaatctaaatttgtgggggagataatacacgttcttaat |
122 |
Q |
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|||| |||||||||||||||||||||| | || ||||||||||||||||||||||||| ||||||| || ||||| ||||| |||||| ||||||||| |
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| T |
5357022 |
ttccatttttcttgatgttgtacttgtcttgtgaaataaaaatgatctacttgtttgacggtaatctgaaattgtgagggagtaaatacaagttcttaat |
5357121 |
T |
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| Q |
123 |
agtgttactttttcagttgaaaccggaagcaagatcacacaagttttctctaaatgacacggtggatgatacaaaagcaagaggaattatatatgcaagt |
222 |
Q |
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| T |
5357122 |
ggtgttaatttttcagttgaaacccgaagcaagatcacacaag--------aaatggcacggtggaggatataaaagctagagaaattatatatgcaagt |
5357213 |
T |
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| Q |
223 |
tttctctagaaattcctttaagtgtggaggacttataacaagaagatcactttttccaagagaaacctttgtactatctagaaaacatgtttaagattat |
322 |
Q |
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| T |
5357214 |
tttctctagaaattccttgaagtgtggaggacttataac---aagatcacctttt-caagagaaatctttgtactatctagaaaacatgtttaagatgat |
5357309 |
T |
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| Q |
323 |
ttattttcccgcattctagtatac |
346 |
Q |
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| T |
5357310 |
ttattttcccgcattctagtatac |
5357333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 5363648 - 5363707
Alignment:
| Q |
23 |
ttccttttttcttgatgttgtacttgtatagtaaaataaaaatgatctacttgtttgagt |
82 |
Q |
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|||| |||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |
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| T |
5363648 |
ttccatttttcttgatgttgtacttgtctagtaaaatgaaaatgtcctacttgtttgagt |
5363707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 5375452 - 5375511
Alignment:
| Q |
23 |
ttccttttttcttgatgttgtacttgtatagtaaaataaaaatgatctacttgtttgagt |
82 |
Q |
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|||| ||||||||| |||||||||||| ||||||||| ||||| ||||| |||||||||| |
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| T |
5375452 |
ttccatttttcttggtgttgtacttgtctagtaaaatgaaaattatctaattgtttgagt |
5375511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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