View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1548_low_14 (Length: 359)
Name: NF1548_low_14
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 33655823 - 33656168
Alignment:
| Q |
1 |
tgtattcagtaaatcctatgcttgaaataatagaaaggtgctgcattcgctgtgcagtcggagacgtatgcacaattgatcgagtgcaaaagcctcatgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33655823 |
tgtattcagtaaatcctatgcttgaaataatagaaaggtactgcatccgctgtgcagtcagagacgtatgcacaattggtcgagtgcaaaagcctcatgg |
33655922 |
T |
|
| Q |
101 |
gaaggaaatgatatcctaactatatgatatattttatctcatattacaagtttacaagaaatgattgttctattttgtaggaacacttttactcaggaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33655923 |
gaaggaaatgatatcctaactatatgatatattttatctcatattacaagtttacaagaaatgattgttctattttgtaggaacacttttgctcaggaaa |
33656022 |
T |
|
| Q |
201 |
aaaccaacatactgaatccacttagtagtttaccttggccaatgtcgaaacttgcatgacttggggttgaatcagaaactgaggcatcacccgtg---gt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
33656023 |
aaaccaacatactgaatccacttagtagtttaccttggccaatgtcgaaacttgcatggcttggggttgaatcagaaactgaggcatcaccagtgccatt |
33656122 |
T |
|
| Q |
298 |
tattttacttcccgagtcatcttcacctgcaagtatgattccagat |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33656123 |
tattttacttcccgagtcatcttcacctgcaagtatgataccagat |
33656168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University