View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1548_low_2 (Length: 692)

Name: NF1548_low_2
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1548_low_2
NF1548_low_2
[»] chr6 (3 HSPs)
chr6 (9-310)||(1731818-1732119)
chr6 (562-676)||(1731460-1731574)
chr6 (356-492)||(1731634-1731772)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 1732119 - 1731818
Alignment:
Q  9 acatcatcataatgaaaaacatatccaaattcattcatcaaagaaagcaagcaaccaacctgctcggaagtgaggcggcgcttcttctccggtgactgct 108  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1732119 acatcatcatagtgaaaaacatatccaaattcattcatcaaagaaagcaagcaaccaacctgctcggaagtgaggcggcgcttcttctccggtgactgct 1732020  T
Q  109 cctcgtagtactcctcatcatacagttcatcaggtgagctaaagaaaggtctcctctttgagccttcctccatgctcatcattgaccttcctgctttcat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1732019 cctcgtagtactcctcatcatacagttcatcaggtgagctaaagaaaggtctcctctttgagccttcctccatgctcatcattgaccttcctgctttcat 1731920  T
Q  209 tcnnnnnnnnnnnnnnnnnnnnnnncctcatcaatttacactcttttctacatcaaacacctcaaacaacatctatatcacaaatcataacacttgcaac 308  Q
    ||                       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1731919 tcagaaaaattcaaaaaattaaaaacctcatcaatttacactcttttctacatcaaacacctcaaacaacatctatatcacaaatcataatacttgcaac 1731820  T
Q  309 ac 310  Q
    ||    
T  1731819 ac 1731818  T

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Target: chr6; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 562 - 676
Target Start/End: Complemental strand, 1731574 - 1731460
Alignment:
Q  562 ccatctgtccataagacgtaactcaactcataaaatcaatattgttatactaaacaccttcacttgggtccgaacctgaacttctcaattgtgtgtgagt 661  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  1731574 ccatctgtccataagacctaactcaactcataaaatcaatattgttatactaaacaccttcacttgggtccaaacctgaacttctcagttgtgtgtgagt 1731475  T
Q  662 ttcaggtgtcccacc 676  Q
    |||||||||||||||    
T  1731474 ttcaggtgtcccacc 1731460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 356 - 492
Target Start/End: Complemental strand, 1731772 - 1731634
Alignment:
Q  356 tattctaattcattttctcacagcctaattttgtgatgcacaaccaagttgctttctttaacaaaaactcaaatcaaatcatatc--ttcnnnnnnnngt 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||         ||    
T  1731772 tattctaattcattttctcacagcctaattttgtgatgcacaaccaagttgctttctttaacaaaaactcaaatcaaatcatatctttttttttttttgt 1731673  T
Q  454 ttgcccaaatttgatacaaaatcaagttgcttcttttac 492  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1731672 ttgcccaaatttgatacaaaatcaagttgcttcttttac 1731634  T

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