View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_21 (Length: 258)
Name: NF1548_low_21
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_21 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 107389 - 107147
Alignment:
| Q |
16 |
gatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatcatgatagaagggagatgcag |
115 |
Q |
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| T |
107389 |
gatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatgatgatagaagggagatgcag |
107290 |
T |
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| Q |
116 |
tgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcaccttcaag |
215 |
Q |
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| T |
107289 |
tgtgaaacacaccatgacagccttgaacagcagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcaccttcaag |
107190 |
T |
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| Q |
216 |
cttaaccaagtggttgatcttcttcagatcacctacaggcagc |
258 |
Q |
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| T |
107189 |
cttaaccaagtggttgatcttcttcggatcacctacaggcagc |
107147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 88025 - 87787
Alignment:
| Q |
16 |
gatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctgagggtctttgacatcatgatagaagggagatgcag |
115 |
Q |
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| T |
88025 |
gatttagcacatgagttgagaacattgagagtccctttgagagcaggatcaatcaattcagcctgaggatccttgacatcatgataaaagggagatgcag |
87926 |
T |
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| Q |
116 |
tgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcaccttcaag |
215 |
Q |
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| T |
87925 |
tgtgaaagacaccatgacagccttgaacaacagaatcaaaggcaccttcttcaagtagatttgccttgaacagttgcaatctctccttagcaccatcaag |
87826 |
T |
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| Q |
216 |
cttaaccaagtggttgatcttcttcagatcacctacagg |
254 |
Q |
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| T |
87825 |
cttaaccaagtggtcaaccttcttgggatcatctacagg |
87787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 44784837 - 44784893
Alignment:
| Q |
16 |
gatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaac |
72 |
Q |
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| T |
44784837 |
gattttgcacatgagttgagaacattgagagtccctttgagcgcaggatcaatcaac |
44784893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 29549082 - 29548967
Alignment:
| Q |
112 |
gcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcacctt |
211 |
Q |
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| T |
29549082 |
gcagtatgaaagacaccatggcatccttgaataacagaatcaaaggaaccttcttcaagtaaatctgccttaaagagttgcaacctttcctttgcaccat |
29548983 |
T |
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| Q |
212 |
caagcttaaccaagtg |
227 |
Q |
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| T |
29548982 |
caagtttaagcaagtg |
29548967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 25934302 - 25934237
Alignment:
| Q |
16 |
gatttggcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactcagcctga |
81 |
Q |
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| T |
25934302 |
gattttgcacatgattgaagaacattaagagttcccttcagtgccggatcaatcaactcagcctga |
25934237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 25933555 - 25933440
Alignment:
| Q |
112 |
gcagtgtgaaacacaccatgacagccttgaacaacagaatcaaaagctccctgttcaagtagatttgccttaaacagttgtaatctctccttagcacctt |
211 |
Q |
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| T |
25933555 |
gcagtatgaaagacaccatcacaaccctcaacaacagagtcaaaagaaccttcttccaagagatctgccttaaagagttgcaacctctcctttgcaccat |
25933456 |
T |
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| Q |
212 |
caagcttaaccaagtg |
227 |
Q |
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| T |
25933455 |
caagtttaaccaagtg |
25933440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 26101933 - 26101881
Alignment:
| Q |
22 |
gcacatgatttgagaacattgagagtcccgttgagtgcaggatcaatcaactc |
74 |
Q |
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| T |
26101933 |
gcacatgatttaagaacattaagagttcccttaagtgccggatcaatcaactc |
26101881 |
T |
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