View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_23 (Length: 249)
Name: NF1548_low_23
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 758458 - 758673
Alignment:
| Q |
1 |
gttgttgttaataattaatatattaattatgatgactcatggaggctagatcttagttatgctaatcaaattaattaaattaatcaatcattccaacatg |
100 |
Q |
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| T |
758458 |
gttgttgttgataattaatatattaattatgatgactcatggaggctagatcttagttatgctaatcaaattaattaa-ttaatcaatcattccaacatg |
758556 |
T |
|
| Q |
101 |
tatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatata |
200 |
Q |
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| T |
758557 |
tatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatata |
758656 |
T |
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| Q |
201 |
ttacttggtaggtgtga |
217 |
Q |
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| T |
758657 |
ttacttggtaggtgtga |
758673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36988913 - 36988700
Alignment:
| Q |
1 |
gttgttgttaataattaatatattaattatgatgactcatggaggctagatcttagttatgctaatcaaattaattaaattaatcaatcattccaacatg |
100 |
Q |
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| T |
36988913 |
gttgttgttaataattaatatattaattatgatgactcatggaggctagatcttagttatgctaatcaaattaattaa-ttaatcaattattccaacatg |
36988815 |
T |
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| Q |
101 |
tatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatata |
200 |
Q |
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| T |
36988814 |
tatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaattaaaaagaaaataaaatatata |
36988715 |
T |
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| Q |
201 |
ttacttggtaggtgt |
215 |
Q |
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| T |
36988714 |
ttacttggtaggtgt |
36988700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 37014352 - 37014139
Alignment:
| Q |
1 |
gttgttgttaataattaatatattaattatgatgactcatggaggctagatcttagttatgctaatcaaattaattaaattaatcaatcattccaacatg |
100 |
Q |
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| T |
37014352 |
gttgttgttaataattaatatattaattatgatgactcatggaggctagatcttagttatgctaatcaaattaattaa-ttaatcaattattccaacatg |
37014254 |
T |
|
| Q |
101 |
tatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatata |
200 |
Q |
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| T |
37014253 |
tatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaattaaaaagaaaataaaatatata |
37014154 |
T |
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| Q |
201 |
ttacttggtaggtgt |
215 |
Q |
| |
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| T |
37014153 |
ttacttggtaggtgt |
37014139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 36443810 - 36443880
Alignment:
| Q |
133 |
gaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatatatatta |
203 |
Q |
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| T |
36443810 |
gaatgaagtaagaagtgataaactaagacaaatcaacaaagggaattaaaaagaagagaaaatatatatta |
36443880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 19180933 - 19181049
Alignment:
| Q |
98 |
atgtatttatgctagaatcttaatgttcatgagaagaatgaaataagaagtgataaactaaaacagatcaacaagaggaatcaaaaagaaaagaaaatat |
197 |
Q |
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| T |
19180933 |
atgtatgtatgctagaatcttagtgttcatgagaagaatgaagtaagaagtgataatctaaaacagatcaacaagaggaattaaaaagaaaagaaaatat |
19181032 |
T |
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| Q |
198 |
atattacttggtaggtg |
214 |
Q |
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| T |
19181033 |
atattacttggtaggtg |
19181049 |
T |
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