View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_27 (Length: 245)
Name: NF1548_low_27
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 9733392 - 9733526
Alignment:
| Q |
95 |
ctccttgaaagtagccactaatagattaacccatcaataactcatgagagagaaaacatgaaccagaaatgatgagagttaaatgcatgtttttggtttt |
194 |
Q |
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| T |
9733392 |
ctccttgaaagtagccactaatagattaacccatcaataactcatgagagagaaaacatgaaccagaaatgatgagagttaaatgcatgtttttggtttt |
9733491 |
T |
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| Q |
195 |
tcagttacacacataaaaataaggtagtactaact |
229 |
Q |
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| T |
9733492 |
tcagttacacacataaaaataaggtagtactaact |
9733526 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 9733310 - 9733365
Alignment:
| Q |
10 |
tagattatactcaagatgtgccattcaccaacaacaaagaacaaaacaacaactat |
65 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9733310 |
tagattacactcaagatgtgccattcaccaacaacaaagaacaaaacaacaactat |
9733365 |
T |
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