View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_28 (Length: 241)
Name: NF1548_low_28
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 31290666 - 31290450
Alignment:
| Q |
15 |
caatgatatctttaaaattaagagaaaattaaagaagacaatctaaatataattattttctaccttatttcatttcattaccattatattagagtataaa |
114 |
Q |
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| T |
31290666 |
caatgatatctttaaaattaagagaaaattaaagaagacaatctaaatataattattttctgccttatttcatttcattaccattatattagagtataaa |
31290567 |
T |
|
| Q |
115 |
accataactacaatgtttttgaaattaaaagagaaaaatattcaaattattgggtgccaaaacgataactaaattacaactcatgaaatattctattagg |
214 |
Q |
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| T |
31290566 |
accataactacaatgtttttgaaattaaaagagaaaaatattcaaattattgggtgccaaaacgataactaaattacaactcatgaaatattctattagg |
31290467 |
T |
|
| Q |
215 |
acgtttgtgtgctctct |
231 |
Q |
| |
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||||||||||||||||| |
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| T |
31290466 |
acgtttgtgtgctctct |
31290450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 231
Target Start/End: Original strand, 28423144 - 28423321
Alignment:
| Q |
54 |
aatctaaatataattattttctaccttatttcatttcattaccattatattagagtataaaaccataactacaatgtttttgaaatta-aaagagaaaaa |
152 |
Q |
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|||||||||| ||||||| || |||||||| ||||||||||||| | | |||||| ||||||||||||| || ||| ||||||||| |||||| |||| |
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| T |
28423144 |
aatctaaataatattatttgctgccttattttatttcattaccatcctgtaagagtacaaaaccataactataaggttcttgaaattagaaagaggaaaa |
28423243 |
T |
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| Q |
153 |
tattcaaattattgggtgccaaaacgataactaaattacaactcatgaaatattctattaggacgtttgtgtgctctct |
231 |
Q |
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| T |
28423244 |
gattcaaacaattaaatgccaacacggtaagtaaatgacagctaatgaagtattctagtagg-cgtttgtgtactctct |
28423321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 6113496 - 6113404
Alignment:
| Q |
49 |
aagacaatctaaatataattattttctaccttatttcatttcattaccattatattagagtataaaaccataactacaatgtttttgaaatta |
141 |
Q |
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| T |
6113496 |
aagacaatcttaatgatattattcactatcttatttgatttcattaccatcatcttagagtacaaagccattactacaaggttcttgaaatta |
6113404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 6069132 - 6069057
Alignment:
| Q |
66 |
attattttctaccttatttcatttcattaccattatattagagtataaaaccataactacaatgtttttgaaatta |
141 |
Q |
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| T |
6069132 |
attatttgctatcttatttcatttcattaacatcatcttagagtacaaaggcattactacaaggttcttgaaatta |
6069057 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 6120359 - 6120296
Alignment:
| Q |
78 |
cttatttcatttcattaccattatattagagtataaaaccataactacaatgtttttgaaatta |
141 |
Q |
| |
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||||||| ||||||||||||| || |||||||| ||| |||| ||||||| ||| ||||||||| |
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|
| T |
6120359 |
cttatttgatttcattaccatcatcttagagtacaaagccattactacaaggttcttgaaatta |
6120296 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 32007964 - 32008015
Alignment:
| Q |
158 |
aaattattgggtgccaaaacgataactaaattacaactcatgaaatattcta |
209 |
Q |
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||||||||||||| ||| || |||||||||| ||||||| |||||||||||| |
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| T |
32007964 |
aaattattgggtgtcaacacaataactaaatgacaactcttgaaatattcta |
32008015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 38750003 - 38749903
Alignment:
| Q |
86 |
atttcattaccattatattagagtataaaaccataactacaatgtttttgaaattaaaagagaaaaatattcaaattattgggtgccaaaacgataacta |
185 |
Q |
| |
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|||| |||||||| ||||||| || |||||||||||| ||| || || ||||||||||| ||| ||||||||||||||| ||| ||| || ||||||| |
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| T |
38750003 |
atttaattaccatcgtattagaatacaaaaccataactgcaacattctt-aaattaaaaga-aaacatattcaaattattgagtgtcaacacaataacta |
38749906 |
T |
|
| Q |
186 |
aat |
188 |
Q |
| |
|
||| |
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|
| T |
38749905 |
aat |
38749903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 20179175 - 20179070
Alignment:
| Q |
46 |
aagaagacaatctaaatataattattttctaccttatttcatttcattaccattatattagagtataaaaccataactacaatgtttttgaaattaaaag |
145 |
Q |
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||||||||||||||| || ||||||| | ||||||||||||| |||||||| |||||| | || ||| |||||||||||| || |||||||| |||| |
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| T |
20179175 |
aagaagacaatctaagtaatattatttg-tgccttatttcatttaattaccatcatattaaattaaaaagacataactacaatattcttgaaattgaaag |
20179077 |
T |
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| Q |
146 |
agaaaaa |
152 |
Q |
| |
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||||||| |
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| T |
20179076 |
agaaaaa |
20179070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 27877966 - 27878020
Alignment:
| Q |
80 |
tatttcatttcattaccatta-tattagagtataaaaccataactacaatgtttt |
133 |
Q |
| |
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|||| |||||||||||||| | |||||||||| ||||||||||||| |||||||| |
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| T |
27877966 |
tattccatttcattaccatcaatattagagtacaaaaccataactagaatgtttt |
27878020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 29797396 - 29797342
Alignment:
| Q |
45 |
aaagaagacaatctaaatataattattttctaccttatttcatttcattaccatt |
99 |
Q |
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||||||||||||||||||| ||| ||| ||| ||||||||||||||||| |||| |
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| T |
29797396 |
aaagaagacaatctaaataatattttttgctatcttatttcatttcattatcatt |
29797342 |
T |
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