View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1548_low_3 (Length: 630)
Name: NF1548_low_3
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_3 |
 | |
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| [»] chr6 (7 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr4 (7 HSPs) |
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| [»] chr3 (7 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 591; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Original strand, 27878022 - 27878644
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878022 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
27878121 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27878122 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
27878221 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27878222 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
27878321 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27878322 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcatcagtgatatctgca |
27878421 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatct |
507 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
27878422 |
ggtctgccatctattgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcccgttgaacttctctatct |
27878521 |
T |
|
| Q |
508 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27878522 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
27878621 |
T |
|
| Q |
608 |
accacagagcatactaagatttt |
630 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27878622 |
accacagagcatactaagatttt |
27878644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 134 - 630
Target Start/End: Complemental strand, 30968287 - 30967790
Alignment:
| Q |
134 |
agaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaag |
233 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968287 |
agaagccatgagttgagaaaatagcgtattcagggtgttgatgtgattcgttacggatgtggattcacccattcgaagagtgtagagccttctctttaag |
30968188 |
T |
|
| Q |
234 |
aatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
30968187 |
aatattctgttgtggagtgatttgacctcgtacaattttattagaatatcccagatctcctttaatgtcttcttttcagcaatacttgacaataccgagt |
30968088 |
T |
|
| Q |
334 |
ccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgcaagtctgccatctattgcgtctaggca |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
30968087 |
ccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccgcttttcaacagtgatatctgcaggtctgccatctattgtgtctaggca |
30967988 |
T |
|
| Q |
434 |
attatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatctcaaatttcgctgccatggttttacac |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
30967987 |
attatcttttcttaaaattgcccttatcttcaatttccacagggaaaaatttctcccgttgaacttctctatctcgaatttcgctgccatggttttacac |
30967888 |
T |
|
| Q |
534 |
caaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagttt-aaaccgcaaccacagagcatactaagatttt |
630 |
Q |
| |
|
|||||||||||| ||||||||||||| || |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
30967887 |
caaatatttttcattcaaactagaccagagtaataagaattcttttatgatgtggaagatcagtttaaaactccaaccacagagcatactaagatttt |
30967790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 9 - 529
Target Start/End: Original strand, 8480120 - 8480640
Alignment:
| Q |
9 |
acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcac |
108 |
Q |
| |
|
||||||||||| ||||||| ||| | || || || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
8480120 |
acatcatcaaaatgaagagagtcaacaatattgttgtttgtaatgttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac |
8480219 |
T |
|
| Q |
109 |
gctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcg |
208 |
Q |
| |
|
| | |||||| ||||| ||||||| || | ||||| |||| |||||| ||||||| |||||| ||||||| ||| ||| || ||||| |||||| |
|
|
| T |
8480220 |
gtttattttcagctatcatgaaatctgatgttgtgagctgagcaaatagtgtattcatggtgtttatgtgatttgttgtcgatatgtattcattcattcg |
8480319 |
T |
|
| Q |
209 |
aagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttt |
308 |
Q |
| |
|
|||||||| || || | |||||||| ||||| |||| ||||| || |||| ||||||||| || | | |||| |||||||| |||| | ||| || |
|
|
| T |
8480320 |
gagagtgtaaagactccattttaagaaaattcttgtgtgaagtgacttcaccttgtacaatttaataataacatcctagatctcccttgcagactttttc |
8480419 |
T |
|
| Q |
309 |
tcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgcaa |
408 |
Q |
| |
|
|| | ||||||||| ||||||||||| || ||||||| ||||||||||| || | || |||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
8480420 |
tctgtaatacttgaaaataccgagtctgcaattgctaagtgcaaattggaaaaaacgttgtcatccatctttttccacttttaatcagtgatatttgcat |
8480519 |
T |
|
| Q |
409 |
gtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatctc |
508 |
Q |
| |
|
||| |||| ||||| |||||||||||||||||||||| ||| ||||||||||| |||||||| | |||||||| ||| | || ||||| || || | |
|
|
| T |
8480520 |
atctaccataaattgcatctaggcaattatcttttcttagaatcgcccttatctttaatttccacaatgaaaaattactctcattaaacttctcaatatt |
8480619 |
T |
|
| Q |
509 |
aaatttcgctgccatggtttt |
529 |
Q |
| |
|
|||||| | || ||||||||| |
|
|
| T |
8480620 |
aaattttgttgtcatggtttt |
8480640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 30968375 - 30968283
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968375 |
gacatcataaaagtgaagagtatcagatatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag |
30968283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 366 - 549
Target Start/End: Original strand, 23012182 - 23012358
Alignment:
| Q |
366 |
ttatcatccatctctttccacttttcgtcagtgatatctgcaagtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttca |
465 |
Q |
| |
|
||||| |||||||||||| ||||||| || ||||||||| || || || ||||||||||| |||| ||||||||||| | ||||||||| |||| |||| |
|
|
| T |
23012182 |
ttatcttccatctctttcaacttttcttctgtgatatctacatgtgggc-atctattgcgtttaggaaattatcttttatcaaaattgccattatattca |
23012280 |
T |
|
| Q |
466 |
atttccaaagggaaaaatttctcccgttgaacttttctatctcaaatttcgctgccatggttttacaccaaatatttttctttc |
549 |
Q |
| |
|
||||||| ||||||||||||||||| || |||| |||| ||||| |||| |||||||||| ||||||||||||| |||| |
|
|
| T |
23012281 |
atttccatagggaaaaatttctcccattcaact------tctcgaattttgctgtcatggttttataccaaatatttttatttc |
23012358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 160 - 402
Target Start/End: Complemental strand, 8481247 - 8481005
Alignment:
| Q |
160 |
tattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgac |
259 |
Q |
| |
|
|||||| |||||| ||||||| |||| ||| |||||||| |||||| |||||||||||||| || || ||||| ||| | | || ||||| ||||| |
|
|
| T |
8481247 |
tattcatggtgtttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctccttttcaagaaaattattgtttgaagtgacttgac |
8481148 |
T |
|
| Q |
260 |
ctcgtacaattttattagagtatcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggca |
359 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||| |||| ||||| || | |||||| ||| | || | |||| |||||||||| ||| |||| |||| |
|
|
| T |
8481147 |
ctcgtacaatttaataagagtatcctagatctcccttgcagtcttattctatacaatacatgaaagtatcaagtctgccattgctaagtgaaaatcggca |
8481048 |
T |
|
| Q |
360 |
acggcattatcatccatctctttccacttttcgtcagtgatat |
402 |
Q |
| |
|
| | || |||||||||||||||||||||| |||||||||| |
|
|
| T |
8481047 |
atatcgttgtcatccatctctttccacttttgatcagtgatat |
8481005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 16777060 - 16777109
Alignment:
| Q |
571 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
16777060 |
aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata |
16777109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 591; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Complemental strand, 41719414 - 41718792
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41719414 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
41719315 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41719314 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
41719215 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41719214 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
41719115 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41719114 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcatcagtgatatctgca |
41719015 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatct |
507 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
41719014 |
ggtctgccatctattgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcccgttgaacttctctatct |
41718915 |
T |
|
| Q |
508 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718914 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
41718815 |
T |
|
| Q |
608 |
accacagagcatactaagatttt |
630 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41718814 |
accacagagcatactaagatttt |
41718792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Complemental strand, 34353017 - 34352542
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34353017 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
34352918 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34352917 |
cgctcattctccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
34352818 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
34352817 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttctt |
34352718 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352717 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
34352618 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaat |
483 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34352617 |
ggtctgccatctattgcgtctaagcaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaat |
34352542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 9 - 499
Target Start/End: Complemental strand, 23319295 - 23318806
Alignment:
| Q |
9 |
acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcac |
108 |
Q |
| |
|
||||||||||| ||||||| ||||| || || || ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
23319295 |
acatcatcaaaatgaagagagtcagcaatattgttgtttgtaatgttgatgatgagttgttcatatgaatgaggtaaactctgaagtagaagttttgcac |
23319196 |
T |
|
| Q |
109 |
gctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcg |
208 |
Q |
| |
|
| |||||||| ||||| ||| ||| || || ||||| |||| |||||| ||||| | ||| || ||||||| |||| ||| |||| ||| ||||| |
|
|
| T |
23319195 |
gttcattttcagctatcatgacatctgaggctgtgagctgagcaaatagtgtatttatggtatttatgtgatttgttattgatatggactcatacattca |
23319096 |
T |
|
| Q |
209 |
aagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttt |
308 |
Q |
| |
|
|||||||||| ||| || |||||||| ||||| ||| ||||||||||||||||||||||| || |||| ||| ||||||||||||| | ||| || |
|
|
| T |
23319095 |
gagagtgtagaacctcctttttaagaaaattcttgcgtgaagtgatttgacctcgtacaatttaataagagcatcttagatctcctttgcagactttttc |
23318996 |
T |
|
| Q |
309 |
tcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgcaa |
408 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||||| ||| ||||||||||| | || |||||||||||||||||||||| || |||||||||||| |
|
|
| T |
23318995 |
tctgcaatacttgacaataccgagtttgtcattgctaagtgaaaattggcaacatcgttgtcatccatctctttccacttttgatcggtgatatctgcag |
23318896 |
T |
|
| Q |
409 |
gtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaactt |
499 |
Q |
| |
|
|| ||||| |||||||||| |||||| |||||| ||| || |||||||||| |||||||| || || ||||| ||||| || ||||| |
|
|
| T |
23318895 |
gttcaccatcaattgcgtctacgcaattttctttt-ttagaaccacccttatctttaatttccacagtgagaaattactcccattaaactt |
23318806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 31502529 - 31502590
Alignment:
| Q |
28 |
tatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactc |
89 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31502529 |
tatcatctatattattatttgtaatgttgatgatgagttgatcatacgaatcttgtaaactc |
31502590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 591; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Original strand, 48701134 - 48701756
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701134 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
48701233 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48701234 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
48701333 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48701334 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
48701433 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48701434 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcatcagtgatatctgca |
48701533 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatct |
507 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
48701534 |
ggtctgccatctattgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcccgttgaacttctctatct |
48701633 |
T |
|
| Q |
508 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701634 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
48701733 |
T |
|
| Q |
608 |
accacagagcatactaagatttt |
630 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48701734 |
accacagagcatactaagatttt |
48701756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Complemental strand, 42266907 - 42266285
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266907 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
42266808 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
42266807 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
42266708 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42266707 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
42266608 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42266607 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcatcagtgatatctgca |
42266508 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |
|
|
| T |
42266507 |
ggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcccgttgaatttctctatct |
42266408 |
T |
|
| Q |
508 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266407 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
42266308 |
T |
|
| Q |
608 |
accacagagcatactaagatttt |
630 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42266307 |
accacagagcatactaagatttt |
42266285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Original strand, 30949496 - 30950118
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30949496 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctggagtagaagttcagca |
30949595 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
30949596 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
30949695 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30949696 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttttt |
30949795 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30949796 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
30949895 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
30949896 |
ggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaattttctcccgttgaacttctctatct |
30949995 |
T |
|
| Q |
508 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30949996 |
caaatttcgctgccatggttttacaccaaatatttttcattcaaactagaccggagtaataagaattcttttctgatgtggaagatcagtttaaaccgca |
30950095 |
T |
|
| Q |
608 |
accacagagcatactaagatttt |
630 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30950096 |
accacagagcatactaagatttt |
30950118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 10 - 549
Target Start/End: Original strand, 21514352 - 21514893
Alignment:
| Q |
10 |
catcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacg |
109 |
Q |
| |
|
|||||||||| ||||| |||||| | | |||| ||| ||||||||| |||||||| ||||||| |||||| |||| || ||||||||||| | | | |
|
|
| T |
21514352 |
catcatcaaaatgaagggtatcaaccacattatcattgataatgttgacgatgagtttatcatacaaatctgataaaaactaaagtagaagtttaactct |
21514451 |
T |
|
| Q |
110 |
ctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcga |
209 |
Q |
| |
|
|||| |||||| |||| |||||| |||| || ||||| |||||| |||||| ||||| |||||||||| ||| | ||||||||| ||||||| |
|
|
| T |
21514452 |
ctcactttccgttattctgaaatttgaagttgtaagttggaaaaataacgtatttagggtattgatgtgatatgttgttgtcttggattcactcattcga |
21514551 |
T |
|
| Q |
210 |
agagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctttt |
309 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||| ||| |||||||||||| |||||||| |||||| | | ||||| |||| |||||| |||| |
|
|
| T |
21514552 |
agagtgtagagccttatttttaagaatattcagttgtgaagtaatttgacctcgttcaattttactagagtgcctcgtatctcatttgttgtcttttttt |
21514651 |
T |
|
| Q |
310 |
c--agcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
| | |||||||||||||| || ||| ||||||| ||||||||||| ||||| |||| || || | |||||||||||||| ||||| |||| || |
|
|
| T |
21514652 |
cccaataatacttgacaatattgaatccaccattgcaaggtgcaaatttgcaacaacattgtcttcattttctttccacttttcatcagtcgtatccaca |
21514751 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatct |
507 |
Q |
| |
|
||| |||| | ||| ||| ||||||||||| |||||| |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| ||||||| |
|
|
| T |
21514752 |
agtttgccttttatcacgtttaggcaattattttttctcaaaattgcccttatctacaatttccacaaggaaaaatttctcccattgaacttctctatct |
21514851 |
T |
|
| Q |
508 |
caaatttcgctgccatggttttacaccaaatatttttctttc |
549 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
21514852 |
caaatttcgttgccatggttttgcaccaaatatttttttttc |
21514893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 231 - 499
Target Start/End: Complemental strand, 1999695 - 1999427
Alignment:
| Q |
231 |
aagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttttcagcaatacttgacaataccg |
330 |
Q |
| |
|
||||| ||||| |||| ||||| ||||||||||||||||| || |||| |||||| ||||||||||| | ||| || || | ||||||||||||||||| |
|
|
| T |
1999695 |
aagaaaattcttgtgtgaagtgacttgacctcgtacaatttaataagagcatcccatatctcctttgcagactttttctctggaatacttgacaataccg |
1999596 |
T |
|
| Q |
331 |
agtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgcaagtctgccatctattgcgtctag |
430 |
Q |
| |
|
| | |||||||||| ||||||||||| ||| || || |||||||||||||||||||||| |||||||||| |||| |||||||||| ||||| ||||| |
|
|
| T |
1999595 |
aatttgccattgctaagtgcaaattggtaacagcgttgtcatccatctctttccacttttgatcagtgatatttgcaggtctgccatcaattgcatctag |
1999496 |
T |
|
| Q |
431 |
gcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaactt |
499 |
Q |
| |
|
|||||| |||||||||| || ||||||||||| ||||||||||| || ||||| ||||| || ||||| |
|
|
| T |
1999495 |
gcaattgtcttttcttagaaccgcccttatctttaatttccaaagtgagaaattactcccattaaactt |
1999427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 1999894 - 1999723
Alignment:
| Q |
9 |
acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcac |
108 |
Q |
| |
|
||||||||||| ||||||| ||||| || || | ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
1999894 |
acatcatcaaaatgaagagagtcagcaatattgtatattgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac |
1999795 |
T |
|
| Q |
109 |
gctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgat |
180 |
Q |
| |
|
| |||||||| |||||| ||||||| || || |||||||||| |||||| ||||||| ||| || ||||||| |
|
|
| T |
1999794 |
gttcattttcagctattgtgaaatctgaggctgtgagttgaggaaatagtgtattcatggtatttatgtgat |
1999723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 549 - 630
Target Start/End: Complemental strand, 1979778 - 1979697
Alignment:
| Q |
549 |
caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttt |
630 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||| |||||||||| || ||| ||||| ||||||| | | || ||||||||||| |
|
|
| T |
1979778 |
caaactagactggaataattagaattcgtttatgatgtggaatattagtctaaactgcaaccatataacaaactaagatttt |
1979697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Original strand, 5822588 - 5823210
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822588 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
5822687 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5822688 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
5822787 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5822788 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
5822887 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5822888 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcatcagtgatatctgca |
5822987 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatct |
507 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
5822988 |
ggtctgccatctattgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcccgttgaacttctctatct |
5823087 |
T |
|
| Q |
508 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823088 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
5823187 |
T |
|
| Q |
608 |
accacagagcatactaagatttt |
630 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5823188 |
accacagagcatactaagatttt |
5823210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Original strand, 2816576 - 2817198
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2816576 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctaaagtagaagttcagca |
2816675 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2816676 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
2816775 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2816776 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattaaagtatcccagatctcctttgctgtcttctt |
2816875 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816876 |
ttcttcaatacttgacaataccgagtccaccatatctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
2816975 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
2816976 |
ggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaaaggaaaaatttctcccgttgaacttctctatct |
2817075 |
T |
|
| Q |
508 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2817076 |
caaatttcgctgccatggttttacaccaaatatttttcattcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccaca |
2817175 |
T |
|
| Q |
608 |
accacagagcatactaagatttt |
630 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
2817176 |
accacatagcatactaagatttt |
2817198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 9 - 529
Target Start/End: Complemental strand, 42585960 - 42585440
Alignment:
| Q |
9 |
acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcac |
108 |
Q |
| |
|
||||||||||| ||||||| ||| | || || ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
42585960 |
acatcatcaaaatgaagagagtcaacaatattgttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac |
42585861 |
T |
|
| Q |
109 |
gctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcg |
208 |
Q |
| |
|
| |||||||| |||||| ||||||| || || ||||| |||| |||||| ||||||| ||| || ||||||| |||| ||| |||||||| |||||| |
|
|
| T |
42585860 |
gttcattttcagctattgtgaaatctgaggctgtgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcg |
42585761 |
T |
|
| Q |
209 |
aagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttt |
308 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| |||| ||||| ||||||||||||||||| || |||| |||||||||||||||||| | ||| || |
|
|
| T |
42585760 |
gagagtgtagagcctcctttttaagaaaattcttgtgtgaagtgacttgacctcgtacaatttaataagagcatcccagatctcctttgcagactttttc |
42585661 |
T |
|
| Q |
309 |
tcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgcaa |
408 |
Q |
| |
|
|| ||||||||||| |||||||| || |||||||||| ||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42585660 |
tctgcaatacttgataataccgaatctgccattgctaagtgcaaattggcaacaacgttgtcatccatctctttccacttttgatcagtgatatctgcag |
42585561 |
T |
|
| Q |
409 |
gtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatctc |
508 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||| || |||||||||||| |||||||| || || ||||| ||||| || ||||| || |||| |
|
|
| T |
42585560 |
gtctgccatcaattgcatctaggcaattgtcttttcttagaactgcccttatctttaatttccacagtgagaaattactcccattaaacttctcaatctt |
42585461 |
T |
|
| Q |
509 |
aaatttcgctgccatggtttt |
529 |
Q |
| |
|
|||||| | |||||||||||| |
|
|
| T |
42585460 |
aaattttgttgccatggtttt |
42585440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 152 - 490
Target Start/End: Complemental strand, 25877693 - 25877355
Alignment:
| Q |
152 |
aaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattctgttgtggagt |
251 |
Q |
| |
|
|||||| ||||||| |||||| ||||||| |||| ||| |||||||| ||||| |||||| |||||||| || |||||||| ||||| |||| ||| |
|
|
| T |
25877693 |
aaatagtgtattcatggtgtttatgtgatttgttattgatatggattcattcattcaaagagtatagagcctcctttttaagaaaattcttgtgtgaagt |
25877594 |
T |
|
| Q |
252 |
gatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccattgctaggtgca |
351 |
Q |
| |
|
|| ||||||||||||||||| | |||| |||||||||||| ||| ||| || || ||||||||||||||| |||||| |||||| ||| ||||| |
|
|
| T |
25877593 |
gacttgacctcgtacaatttaaaaagagcgtcccagatctcccttgaaaactttttctctccaatacttgacaatatcgagtctgccattactaagtgca |
25877494 |
T |
|
| Q |
352 |
aattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgcaagtctgccatctattgcgtctaggcaattatcttttcttaaaat |
451 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||||| |||||||||| |||| | || ||||| | || |||| | |||| |||||||||| || |
|
|
| T |
25877493 |
aattggcaataacattgtcatccatctcttttcacttttgatcagtgatatttgcatgcctaccatcaactgtgtctcgacaatagtcttttcttagaac |
25877394 |
T |
|
| Q |
452 |
tgcccttatcttcaatttccaaagggaaaaatttctccc |
490 |
Q |
| |
|
|||||||||| ||||| || || || ||||| ||||| |
|
|
| T |
25877393 |
atcccttatctttaattttcacagtgagaaattactccc |
25877355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 39 - 402
Target Start/End: Original strand, 47277124 - 47277494
Alignment:
| Q |
39 |
ttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttca--gcacgctcattttccgctattttgaaatcaga |
136 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| || |||| ||||| |||||||||||||| ||| ||||||||||||| || | ||| ||| |
|
|
| T |
47277124 |
ttattgttggtaatgttgatgatgaggtgatcatacaaagatggttaactcagaagtagaagttcaacacacactcattttccgcttttctaaaacgaga |
47277223 |
T |
|
| Q |
137 |
agccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaat |
236 |
Q |
| |
|
|| ||||| ||||||||| || |||||| |||||| ||||||| ||| || |||||||||||| ||| || ||||||| | |||| ||||| ||| |
|
|
| T |
47277224 |
agttgtgagatgagaaaattgcatattcaaggtgtt-atgtgatatgtt--tgacgtggattcacccgttcaaaaagtgtagtgtcttccttttaataat |
47277320 |
T |
|
| Q |
237 |
attctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtct---tcttttcagcaatacttgacaatac----- |
328 |
Q |
| |
|
||| | ||||| | ||||| | |||||| ||||||||||||||||| || |||||||||| ||| | |||| ||| ||||||||||||||| |
|
|
| T |
47277321 |
attttattgtgaaatgattatatctcgtataattttattagagtatcacatatctcctttgttgtattaatcttctcataaatacttgacaatactgtgt |
47277420 |
T |
|
| Q |
329 |
cgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatat |
402 |
Q |
| |
|
||| | |||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
47277421 |
tgagcctgccattgctaggtgcaaattggcaacaataatatcatctatctctttccatttttcgtcaatgatat |
47277494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 5382624 - 5382673
Alignment:
| Q |
571 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
5382624 |
aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata |
5382673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 566 - 620
Target Start/End: Original strand, 13722392 - 13722446
Alignment:
| Q |
566 |
ataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
13722392 |
ataataattcttttctgatgtggaagatcagattaaactacaaccacagagcata |
13722446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 575; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Original strand, 9443405 - 9444027
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443405 |
gacatcattaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
9443504 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
9443505 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
9443604 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9443605 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
9443704 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
9443705 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcatcagtgatatctgta |
9443804 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatct |
507 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |
|
|
| T |
9443805 |
ggtctgccatctattgcgtctagacaattatcttttcttaaaattgcccttatcttcaatttccatagggaaaaatttctcccgttgaatttctctatct |
9443904 |
T |
|
| Q |
508 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443905 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
9444004 |
T |
|
| Q |
608 |
accacagagcatactaagatttt |
630 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9444005 |
accacagagcatactaagatttt |
9444027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 42 - 529
Target Start/End: Original strand, 24597829 - 24598316
Alignment:
| Q |
42 |
ttatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccg |
141 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| || || | |
|
|
| T |
24597829 |
ttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctg |
24597928 |
T |
|
| Q |
142 |
tgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattcgaagagtgtagagccttctctttaagaatattct |
241 |
Q |
| |
|
|||| |||| |||||| ||||||| ||| || ||||||| |||| ||| |||||||| |||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
24597929 |
tgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctcctttttaagaaaattct |
24598028 |
T |
|
| Q |
242 |
gttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtccgccatt |
341 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || |||| |||||||||||||||||| | ||| || || |||||||||||||||||||| || |||||| |
|
|
| T |
24598029 |
tgtgtgaagtgacttgacctcgtacaatttaataagagcatcccagatctcctttgcagactttttctctgcaatacttgacaataccgaatctgccatt |
24598128 |
T |
|
| Q |
342 |
gctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgcaagtctgccatctattgcgtctaggcaattatctt |
441 |
Q |
| |
|
|||| ||||||||||||||| || || |||||||||||||||||||||| || |||||||||||| |||||||||| ||||| ||||||||||| |||| |
|
|
| T |
24598129 |
gctaagtgcaaattggcaacagcgttgtcatccatctctttccacttttgatcggtgatatctgcaggtctgccatcaattgcatctaggcaattgtctt |
24598228 |
T |
|
| Q |
442 |
ttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatctcaaatttcgctgccatggtttt |
529 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||| || || ||||| ||||| || ||||| || |||| |||||| | |||||||||||| |
|
|
| T |
24598229 |
ttcttagaatcgcccttatctttaatttccacagtgagaaattactcccattaaacttctcaatcttaaattttgttgccatggtttt |
24598316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 87267 - 87218
Alignment:
| Q |
571 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
87267 |
aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata |
87218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 573 - 620
Target Start/End: Complemental strand, 19803226 - 19803179
Alignment:
| Q |
573 |
ttcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
19803226 |
ttcttttctgatgtggaagatcagattaaactgcaaccacagagcata |
19803179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Complemental strand, 826483 - 825861
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
826483 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
826384 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
826383 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattaagggtgttgatgtgatctgttacggatgtggattcacccattc |
826284 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
826283 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
826184 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
826183 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggaattatcatccatctctttccacttttcatcagtgatatctgca |
826084 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||| |
|
|
| T |
826083 |
ggtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccatagcgaaaaatttctcccgttgaacttctcaatct |
825984 |
T |
|
| Q |
508 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825983 |
caaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaacaataagaattcttttctgatgtggaagatcagtttaaaccgca |
825884 |
T |
|
| Q |
608 |
accacagagcatactaagatttt |
630 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
825883 |
accacagagcatactaagatttt |
825861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 8 - 630
Target Start/End: Original strand, 13843110 - 13843732
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||| || || ||| ||||||||||||||| || |
|
|
| T |
13843110 |
gacatcatcaaagtgaagagtgtcaactatattgttatttgtaatgttgatgatgagttgatcatacaaatttgatatactatgaagtagaagttcaaca |
13843209 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
|||||||||| |||||| |||||||||||| || |||||||||||||| ||||||| ||| || ||||||| |||| ||||||||||||| ||||| |
|
|
| T |
13843210 |
tgctcattttctgctattatgaaatcagaagttgtaagttgagaaaatagtgtattcaaggtcttaatgtgatatgttattgatgtggattcactcattc |
13843309 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatct-cctttgctgtcttct |
306 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||| || ||| |||||||||||||||||||||||||||| ||| |||||| |||||| || ||||| |
|
|
| T |
13843310 |
taagagtgtagagcctcccatttaagaatattatgttatgaagttatttgacctcgtacaattttattagagtgtcctagatcttcctttgttgccttct |
13843409 |
T |
|
| Q |
307 |
tttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgc |
406 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||| | |||||||| |||||||| |||||||||||||||||| ||| |
|
|
| T |
13843410 |
tttcaacaatacttgacaatatcgagtctaccattgcaaggtgcaaattggcaacaacgttatcatctatctctttttacttttcgtcagtgatatttgc |
13843509 |
T |
|
| Q |
407 |
aagtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatc |
506 |
Q |
| |
|
|||| ||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
13843510 |
aagtttgccatcaattgtgtctacacaattatcttttcttaaaattgcttgtatcttcaatttccaaagggaagaatttctcctgttgaacttttctatc |
13843609 |
T |
|
| Q |
507 |
tcaaatttcgctgccatggttttacaccaaatatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgc |
606 |
Q |
| |
|
|||||||||| || |||||||||||||||| | ||||||||| || || | || ||||||||||||| |||| |||||||||| |||| | || | || |
|
|
| T |
13843610 |
tcaaatttcgatgtcatggttttacaccaactttttttcttt-aagctggtcctaaataataagaatttttttttgatgtggaaaatcaatctatattgc |
13843708 |
T |
|
| Q |
607 |
aaccacagagcatactaagatttt |
630 |
Q |
| |
|
||||||| | |||||||| ||||| |
|
|
| T |
13843709 |
aaccacataacatactaatatttt |
13843732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 630
Target Start/End: Original strand, 8137771 - 8138399
Alignment:
| Q |
8 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
8137771 |
gacattatcaaagtgaagagtatcagctatgttattatttggaatgttgatgatgagttgatcatacaaatatggtaaactctgaagtagaagttccaca |
8137870 |
T |
|
| Q |
108 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccattc |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | || || |||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
8137871 |
cgctcattttccgctattttgaaattagaagttgggattttagaaaataccgtattcagggtgttgatgtgatctgttatgaatgtggattcacccattc |
8137970 |
T |
|
| Q |
208 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
8137971 |
gaagagtgtagagcctcctctttaagaatattctgttgcggagtgatttgacctcgtacaattttattagagtatccccgatctcgtttgttgtcttctt |
8138070 |
T |
|
| Q |
308 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtcagtgatatctgca |
407 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||||| ||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
8138071 |
ttcagcaatacttgacaatacccagtctgccattgctaggtgcaggttggcaacaacattatcttccatctttttccactttttgttagtgatatctgca |
8138170 |
T |
|
| Q |
408 |
agtctgccatctattgcgtctaggcaatta-tcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaacttttctatc |
506 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||| |
|
|
| T |
8138171 |
ggtctgccatctattgcgtctatgcaattatttttttcttaaaattgcccttatcttcaatttcaatagggaaaaatttctctcgttgaacttctctatc |
8138270 |
T |
|
| Q |
507 |
tcaaatttcgctgccatggttttacaccaa-----atatttttctttcaaactagaccggaataataagaattcttttctgatgtggaagatcagtttaa |
601 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||| |||||||| | | |||| ||||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
8138271 |
taaaatttcgctgccatggttttacaccaattattttatttttctctcaaactatatcaaaatagtaagaattcttttatgatgtggaagttcagtctaa |
8138370 |
T |
|
| Q |
602 |
accgcaaccacagagcatactaagatttt |
630 |
Q |
| |
|
||| |||||| | |||||||||||||||| |
|
|
| T |
8138371 |
accacaaccaaatagcatactaagatttt |
8138399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 299 - 630
Target Start/End: Complemental strand, 25441478 - 25441141
Alignment:
| Q |
299 |
tgtcttcttttcagcaatacttgacaataccgagtccgccattg----ctaggtgcaaattggcaacggcattatcatccatctctttccacttttcgtc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||| | | |||||||||||| ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
25441478 |
tgtcttcttttcagcaatacttgacaatactgagtccgtcattggcgtcgatgtgcaaattggcgacgacattatcatccatctctttccactttccgtc |
25441379 |
T |
|
| Q |
395 |
agtgatatctgcaagtctgccatctattgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttg |
494 |
Q |
| |
|
||||||||||||| ||||| ||||||| || |||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||| ||| |
|
|
| T |
25441378 |
agtgatatctgcaggtctgacatctatcgcatctaggcaattatcttctcttaaaatttcccttatcttcaatttccataggaaaaaatttctcccattg |
25441279 |
T |
|
| Q |
495 |
aacttttctatctcaaatttcgctgccatggttttacaccaaata--tttttctttcaaactagaccggaataataagaattcttttctgatgtggaaga |
592 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
25441278 |
aacttctctatctcaaatttcgctgccatggtttttcaccaaatatgttttttcttcaaactagacaggaataataagaattcttttatgatgtgaaaga |
25441179 |
T |
|
| Q |
593 |
tcagtttaaaccgcaaccacagagcatactaagatttt |
630 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25441178 |
tcagtttacaccgcaaccacagagcatactaagatttt |
25441141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 11712121 - 11712072
Alignment:
| Q |
571 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
11712121 |
aattattttctgatgtggaagatcagattaaactgcaaccacagagcata |
11712072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 28822 - 28871
Alignment:
| Q |
571 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
28822 |
aattcttttctgatgtggaagatcagattaaactgcaaccacagagcata |
28871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 2796411 - 2796460
Alignment:
| Q |
571 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
2796411 |
aattcttttctgatgtggaagatcacattaaactgcaaccacagagcata |
2796460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 42376144 - 42376095
Alignment:
| Q |
571 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
42376144 |
aattcttttctgatgtggaagatcagattaaactgcaaccacaaagcata |
42376095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 498
Target Start/End: Original strand, 46344296 - 46344372
Alignment:
| Q |
422 |
tgcgtctaggcaattatcttttcttaaaattgcccttatcttcaatttccaaagggaaaaatttctcccgttgaact |
498 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| |||| || | |||||||||||||| ||||||| |
|
|
| T |
46344296 |
tgcgtctaggcaattatggtttcttaaaattgcatttatcttcgattttcacaaggaaaaatttctccaattgaact |
46344372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 14476165 - 14476214
Alignment:
| Q |
571 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| ||||||| |||||||| |
|
|
| T |
14476165 |
aattcttttctgatgtggaagatccgattaaactgcaaccatagagcata |
14476214 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 571 - 620
Target Start/End: Complemental strand, 23201196 - 23201147
Alignment:
| Q |
571 |
aattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcata |
620 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
23201196 |
aattcttttctgatgtggaagatcatattaaactgcaaccacatagcata |
23201147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 46452619 - 46452552
Alignment:
| Q |
49 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatttt |
117 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
46452619 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
46452552 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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