View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_31 (Length: 236)
Name: NF1548_low_31
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8055312 - 8055531
Alignment:
| Q |
1 |
tatatatccaaaagtaaaagcttctcaccaataccaaacaaaacaaaaacatccttaaacattcatctcatcattacaaataatcaaacaagagaattta |
100 |
Q |
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| T |
8055312 |
tatatatccaaaagtaaaagcttctcaccaataccaaacaaaacaaaaacatccttaaacattcatctcatcattacaaataatcaaacaagagaattta |
8055411 |
T |
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| Q |
101 |
gttgtgtggagtgaatttgaagatgactttgtttgacatggatttaagtagtgtagtgaacaatttgttgaatcatgttcatgaaactccttcaagggat |
200 |
Q |
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| T |
8055412 |
gttgtgtggagtgaatttgaagatgactttgtttgacatggatttgagtagtgtagtgaacaatttcttgaatcatgttcatgaaactccttcaagggat |
8055511 |
T |
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| Q |
201 |
catgagaatcatgagagcag |
220 |
Q |
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| T |
8055512 |
catgagaatcatgagagcag |
8055531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 8048340 - 8048386
Alignment:
| Q |
120 |
aagatgactttgtttgacatggatttaagtagtgtagtgaacaattt |
166 |
Q |
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|||||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
8048340 |
aagatgactttgtttgacatggatttgagtagtgtactaaacaattt |
8048386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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