View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_34 (Length: 227)
Name: NF1548_low_34
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 22292050 - 22291870
Alignment:
| Q |
17 |
agaacagggtaatagttgattgaatcggatccactaattttgttgttgtatttgacctcaagaattcaccagaagcctcacccttcacatcaaagccaaa |
116 |
Q |
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| T |
22292050 |
agaacagggtaatagttgattgaatcggatccactaattttgttgttgtatttgacttcaagaattcaccagaagcctcacccttcacatcaaagccaaa |
22291951 |
T |
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| Q |
117 |
tgaatgaaaaccattcggtttcattctcagtttcacccctcactttcatcttctcttatttctcaactttcattatttccaagtttatattcttttt |
213 |
Q |
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| T |
22291950 |
tgaatgaaaaccattcggtttcattctcagtt----------------tcttctcttatttctcacctttcattatttccaagtttatatgcttttt |
22291870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 53559393 - 53559297
Alignment:
| Q |
75 |
caagaattcaccagaagcctcacccttcacatcaaagccaaatgaatgaaaaccattcggtttcattctcagtttcacccctcactttcatcttctc |
171 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53559393 |
caagaattcaccagaagcctgacccctcacatcaaagccaaatgaatgaaaaccattcggtttcaatctcagtttcacccctcactttcatcttctc |
53559297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 172
Target Start/End: Original strand, 17682568 - 17682599
Alignment:
| Q |
141 |
tctcagtttcacccctcactttcatcttctct |
172 |
Q |
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| T |
17682568 |
tctcagtttcacccctcactttcatcttctct |
17682599 |
T |
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