View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_38 (Length: 210)
Name: NF1548_low_38
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 9796477 - 9796670
Alignment:
| Q |
1 |
tcaacccacgaaacactccttgttgtaccctcatcaggggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagg |
100 |
Q |
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| T |
9796477 |
tcaacccacgaaacaatcgttgttgtaccctcatcagcggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagg |
9796576 |
T |
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| Q |
101 |
aataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtagggttaatacgcccgttggttacacatgtagacgttaagatatc |
194 |
Q |
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| T |
9796577 |
aataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtggggttaatacgcccgctggtttcacatgtagacgttaagatatc |
9796670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 9802478 - 9802671
Alignment:
| Q |
1 |
tcaacccacgaaacactccttgttgtaccctcatcaggggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagg |
100 |
Q |
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| T |
9802478 |
tcaacccacgaaacaatcgttgttgtaccctcatcagcggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcatagg |
9802577 |
T |
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| Q |
101 |
aataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtagggttaatacgcccgttggttacacatgtagacgttaagatatc |
194 |
Q |
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| T |
9802578 |
aataagtgttaacatcaatgctgacttgaaaataatcttgaacagttgtggggttaatacgcccgctggtttcacatgtagacgttaagatatc |
9802671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 9757339 - 9757427
Alignment:
| Q |
17 |
tccttgttgtaccctcatcaggggccttgttgatctagatgccgctgtgtgtgtttgcgctgcactcaaagctaatatcataggaataa |
105 |
Q |
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| T |
9757339 |
tccttgttgtagcctcatcagcggccttgttgatttagacgcttctgtgtgtctttgcactgcacttaaagctaatgtcttaggaataa |
9757427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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