View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1548_low_4 (Length: 489)

Name: NF1548_low_4
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1548_low_4
NF1548_low_4
[»] scaffold0421 (1 HSPs)
scaffold0421 (10-446)||(4568-5007)
[»] chr2 (6 HSPs)
chr2 (10-444)||(15930552-15931001)
chr2 (176-279)||(38088778-38088879)
chr2 (382-445)||(13067192-13067255)
chr2 (351-445)||(40915479-40915573)
chr2 (393-445)||(4814603-4814654)
chr2 (383-445)||(9059889-9059950)
[»] chr5 (3 HSPs)
chr5 (359-445)||(29632607-29632693)
chr5 (351-445)||(21012015-21012109)
chr5 (351-445)||(21654547-21654641)
[»] chr4 (4 HSPs)
chr4 (351-445)||(42998643-42998737)
chr4 (351-445)||(42999236-42999330)
chr4 (351-445)||(50232995-50233089)
chr4 (393-436)||(43605638-43605681)
[»] chr8 (2 HSPs)
chr8 (366-443)||(5242689-5242766)
chr8 (444-474)||(29844892-29844922)
[»] chr3 (10 HSPs)
chr3 (351-445)||(32793233-32793327)
chr3 (351-445)||(50833606-50833700)
chr3 (351-445)||(50842153-50842247)
chr3 (368-445)||(50833825-50833902)
chr3 (368-445)||(50841951-50842028)
chr3 (393-445)||(50833760-50833812)
chr3 (393-445)||(50842041-50842093)
chr3 (371-442)||(48761952-48762023)
chr3 (397-446)||(1273696-1273745)
chr3 (371-436)||(16980976-16981041)
[»] chr1 (3 HSPs)
chr1 (382-443)||(48538558-48538619)
chr1 (351-445)||(24535406-24535500)
chr1 (351-444)||(39179965-39180058)
[»] chr7 (3 HSPs)
chr7 (351-445)||(18478630-18478724)
chr7 (387-445)||(18418435-18418493)
chr7 (392-445)||(23485480-23485532)
[»] scaffold0246 (1 HSPs)
scaffold0246 (386-441)||(11383-11438)
[»] chr6 (2 HSPs)
chr6 (359-445)||(7015465-7015551)
chr6 (371-442)||(5169674-5169745)
[»] scaffold1598 (1 HSPs)
scaffold1598 (371-442)||(892-963)


Alignment Details
Target: scaffold0421 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 446
Target Start/End: Complemental strand, 5007 - 4568
Alignment:
Q  10 agatgaacttgaatagatacagtggtctaacattaatatagtgttagtaaaaagtttaatagagtgttta--atatataaaatggagcttttattgatac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  5007 agatgaacttgaatagatacagtggtctaacattaatatagtgttagtaaaaagtttaatagagtgtttataatatataaaatggagcttttattgatac 4908  T
Q  108 ttgcatgtttgctttgaaaacatgcatgctcgtgaccttgagccatgtgctctagttagtagctcaagcatggataattggaaattcaaaatgcaaagaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4907 ttgcatgtttgctttgaaaacatgcatgctcgtgaccttgagccatgtgctctagttagtagctcaagcatggataattggaaattcaaaatgcaaagaa 4808  T
Q  208 tttaaaaggctataatgtatcatggttaacaacatattttagtaaatgccaccgaattaataaggtttgatt--nnnnnnnnnttcaaattcaaacagcc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||    
T  4807 tttaaaaggctataatgtatcatggttaacaacatattttagtaaatgccaccgaattaataaggtttgattccaaaaaaaaattcaaattcaaacagcc 4708  T
Q  306 aaatactttgaaattcaaatagtggaattttgaagggannnnnnnagggttagcactaagaacaattaatgcattggttttagagggaaatttttagggt 405  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4707 aaatactttgaaattcaaatagtggaattttgaaggga-ttttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagagt 4609  T
Q  406 taagtgtttgcaaacctaataacattaaggaataagggatg 446  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4608 taagtgtttgcaaacctaataacattaaggaataagggatg 4568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 444
Target Start/End: Original strand, 15930552 - 15931001
Alignment:
Q  10 agatgaacttgaatagatacagtggtctaacattaatatagtgttagtaaaaagtttaatagagtgttta--atatataaaatggagcttttattgatac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  15930552 agatgaacttgaatagatacagtggtctaacattaatatagtgttagtaaaaagtttaatagagtgtttataatatataaaatggagcttttattgatac 15930651  T
Q  108 ttgcatgtttgctttgaaaacatgcatgctcgtgaccttgagccatgtgctctagttagtagctcaagcatggataattggaaattcaaaatgcaaagaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15930652 ttgcatgtttgctttgaaaacatgcatgctcgtgaccttgagccatgtgctgtagttagtagctcaagcatggataattggaaattcaaaatgcaaagaa 15930751  T
Q  208 tttaaaaggctataatgtatcatggttaacaacatattttagtaaatgccaccgaattaataaggtttgatt--nnnnnnnnnttcaaa----------- 294  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||               
T  15930752 tttaaaaggctataatgtattatggttaacaacatattttagtaaatgccaccgaattaataaggtttgattccaaaaaaaaattcaaattcaaattcaa 15930851  T
Q  295 -ttcaaacagccaaatactttgaaattcaaatagtggaattttgaagggannnnnnnagggttagcactaagaacaattaatgcattggttttagaggga 393  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  15930852 attcaaacagccaaatactttgaaattcaaatagtggaattttgaaggga-ttttttagggttagcactaagaacaattaatgcattggttttagaggga 15930950  T
Q  394 aatttttagggttaagtgtttgcaaacctaataacattaaggaataaggga 444  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15930951 aatttttagggttaaatgtttgcaaacctaataacattaaggaataaggga 15931001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 38088778 - 38088879
Alignment:
Q  176 catggataattggaaattcaaaatgcaaagaatttaaaaggctataatgtatcatggttaacaacatattttagtaaatgccaccgaattaataaggttt 275  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||  |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||    
T  38088778 catggataatttgaaattcaaaatgcaaagaatttaaaatgtta--atgtatcacggttaacaacatactttagttaatgccaccgaattaataaggttt 38088875  T
Q  276 gatt 279  Q
    ||||    
T  38088876 gatt 38088879  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 382 - 445
Target Start/End: Original strand, 13067192 - 13067255
Alignment:
Q  382 gttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  13067192 gttttagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 13067255  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 40915479 - 40915573
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| |||||| |||||||||| ||    ||| |||||||| |||||||||||||||| |||| ||||||| ||||||||||| ||||||||    
T  40915479 agggttaacactaacaacaattaatacaacattttgagagggaattttttagggttaagtgattgctaacctaacaacattaaggagtaagggat 40915573  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 4814654 - 4814603
Alignment:
Q  393 aaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    |||| ||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  4814654 aaatctttagggttaagtgtttgc-aacctaataaaattaaggagtaagggat 4814603  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 445
Target Start/End: Original strand, 9059889 - 9059950
Alignment:
Q  383 ttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||||  ||||||||||||||||||  |||| |||||||||| |||||||| ||||||||    
T  9059889 ttttagagtcaaatttttagggttaagttgttgc-aacctaataagattaaggagtaagggat 9059950  T

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Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 359 - 445
Target Start/End: Original strand, 29632607 - 29632693
Alignment:
Q  359 cactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29632607 cactaacaacaattaatgcattagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggagtaagggat 29632693  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 21012015 - 21012109
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| |||||| |||||||||| ||    ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  21012015 agggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 21012109  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 445
Target Start/End: Complemental strand, 21654641 - 21654547
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| |||||| || |||||||||||  | ||||||||||||  | ||||||| |||||||||| |||||||||||||||||| ||||||||    
T  21654641 agggttaacactaacaataattaatgcatcagatttagagggaaaaatgtagggtttagtgtttgcacacctaataacattaaggagtaagggat 21654547  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 42998643 - 42998737
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| |||||| ||||||||||||||  | |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  42998643 agggttaacactaacaacaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagggat 42998737  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 42999236 - 42999330
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| |||||| | ||||||||||||  | |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  42999236 agggttaacactaacagcaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagggat 42999330  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 50232995 - 50233089
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| |||||| |||||||||| ||    ||| || | |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  50232995 agggttaacactaacaacaattaatacaacattttgagcgagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50233089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 436
Target Start/End: Original strand, 43605638 - 43605681
Alignment:
Q  393 aaatttttagggttaagtgtttgcaaacctaataacattaagga 436  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  43605638 aaatttttagggttaattgtttgcaaacctaataacattaagga 43605681  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 5242689 - 5242766
Alignment:
Q  366 aacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataaggg 443  Q
    ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5242689 aacaattaatgcaatagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggagtaaggg 5242766  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 474
Target Start/End: Complemental strand, 29844922 - 29844892
Alignment:
Q  444 atgtaaaaaataacatcaaataaacaataat 474  Q
    |||||||||||||||||||||||||||||||    
T  29844922 atgtaaaaaataacatcaaataaacaataat 29844892  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 32793233 - 32793327
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| |||||| |||||||||| ||    ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  32793233 agggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 32793327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 50833606 - 50833700
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| |||||| |||||||||| ||    ||| |||| |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  50833606 agggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50833700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 445
Target Start/End: Complemental strand, 50842247 - 50842153
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| |||||| |||||||||| ||    ||| |||| |||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  50842247 agggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50842153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 445
Target Start/End: Complemental strand, 50833902 - 50833825
Alignment:
Q  368 caattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||||||| | | ||| |||  ||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  50833902 caattaatgcaatagatttggagccaaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggat 50833825  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 445
Target Start/End: Original strand, 50841951 - 50842028
Alignment:
Q  368 caattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||||||| | | ||| |||  ||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  50841951 caattaatgcaatagatttggagccaaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggat 50842028  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 50833812 - 50833760
Alignment:
Q  393 aaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  50833812 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggat 50833760  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 445
Target Start/End: Original strand, 50842041 - 50842093
Alignment:
Q  393 aaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  50842041 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggat 50842093  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 48762023 - 48761952
Alignment:
Q  371 ttaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 442  Q
    |||||||| | | |||||||||||||| |||||||| |||| ||||||||||||||| ||||| || |||||    
T  48762023 ttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaagagtaagg 48761952  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 1273745 - 1273696
Alignment:
Q  397 ttttagggttaagtgtttgcaaacctaataacattaaggaataagggatg 446  Q
    |||||||||| |||| ||||||||||||||||||| | ||||||||||||    
T  1273745 ttttagggtttagtgattgcaaacctaataacatttaagaataagggatg 1273696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 16981041 - 16980976
Alignment:
Q  371 ttaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaagga 436  Q
    |||||||||  | |||||||  || ||||||||||||||   ||||||||||||||||||||||||    
T  16981041 ttaatgcatgagatttagagaaaattttttagggttaagcaattgcaaacctaataacattaagga 16980976  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 48538619 - 48538558
Alignment:
Q  382 gttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataaggg 443  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  48538619 gttttagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaaggg 48538558  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 445
Target Start/End: Original strand, 24535406 - 24535500
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| |||||| |||||||||| ||    ||| |||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||    
T  24535406 agggttaacactaacaacaattaatacaacattttgagagggaaattttttgggttaagtgattgctaacctaataacattaaggagtaagggat 24535500  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 351 - 444
Target Start/End: Complemental strand, 39180058 - 39179965
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataaggga 444  Q
    ||||||| ||| || |||| ||||||||   | |||||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||    
T  39180058 agggttatcaccaacaacatttaatgcaaaagatttagagggaaattattagggtttagtggttgcaaacctaataacattaaggagtaaggga 39179965  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 445
Target Start/End: Complemental strand, 18478724 - 18478630
Alignment:
Q  351 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||| ||| || |||| |||||||| | | |||||||||||||| |||||||| |||  |||||||||||||||||||||||| ||||||||    
T  18478724 agggttatcaccaacaacatttaatgcaatagatttagagggaaattattagggtttagtagttgcaaacctaataacattaaggagtaagggat 18478630  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 18418435 - 18418493
Alignment:
Q  387 agagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||    
T  18418435 agagggaaatttttagggttaagtgattgctaacctaacaacattaaggagtaagggat 18418493  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 23485532 - 23485480
Alignment:
Q  392 gaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  23485532 gaaatttttagggttaagtgtttgc-aacctaataaaattaaggagtaagggat 23485480  T

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Target: scaffold0246 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 11438 - 11383
Alignment:
Q  386 tagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataag 441  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  11438 tagagggaaatttttaaggttaagtgtttgaaaacctaataacattaaggagtaag 11383  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 445
Target Start/End: Complemental strand, 7015551 - 7015465
Alignment:
Q  359 cactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagggat 445  Q
    |||||| |||| ||||| || | | |||||||||||||  |||||||| |||| |||||||||||||||||||||||| ||||||||    
T  7015551 cactaacaacatttaatacaatagatttagagggaaataattagggtttagtggttgcaaacctaataacattaaggagtaagggat 7015465  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 5169745 - 5169674
Alignment:
Q  371 ttaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 442  Q
    |||||||| | | |||||||||||||| |||||||| |||| ||||||||||||||| |||||||| |||||    
T  5169745 ttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaggagtaagg 5169674  T

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Target: scaffold1598 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1598
Description:

Target: scaffold1598; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 963 - 892
Alignment:
Q  371 ttaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 442  Q
    |||||||| | | |||||||||||||| |||||||| |||| ||||||||||||||| ||||| || |||||    
T  963 ttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaagagtaagg 892  T

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